genome.fa.s1762.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001762.1 Hibiscus syriacus cultivar Beakdansim tig00003559_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91798

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79--107	13	2.1	14	93	6	51	44	0	0	55	0.99
1074--1124	19	2.5	21	79	20	63	5	21	0	72	1.05
5559--5604	2	23.0	2	95	0	74	50	4	0	45	1.21
14088--14117	4	7.8	4	92	7	53	23	0	0	76	0.78
14362--14420	25	2.3	25	88	2	82	37	13	8	40	1.75
27153--27365	20	10.6	20	83	5	250	34	26	19	19	1.96
27747--27817	33	2.2	33	92	0	115	11	22	18	47	1.80
27938--27992	14	3.6	14	73	21	56	41	23	25	9	1.83
27938--28008	33	2.2	33	94	0	124	43	25	22	8	1.81
28004--28101	19	5.7	19	70	22	81	10	24	22	42	1.84
28026--28115	14	5.7	14	74	23	81	8	25	23	42	1.83
28009--28123	33	3.5	33	95	0	212	9	24	20	45	1.81
29821--30107	93	3.1	93	98	1	558	22	12	18	45	1.83
30151--30279	19	7.3	19	75	17	125	45	28	17	8	1.77
30187--30279	33	2.8	32	91	4	150	46	27	18	7	1.76
30151--30279	52	2.5	52	74	14	140	45	28	17	8	1.77
30275--30391	19	6.7	19	76	16	112	10	20	23	46	1.81
30297--30352	14	3.7	14	80	17	67	10	21	23	44	1.83
30280--30371	32	2.8	33	91	3	159	10	20	21	46	1.81
30343--30407	19	3.4	19	85	4	78	10	16	27	44	1.81
32328--32363	14	2.6	14	95	0	63	33	0	22	44	1.53
32470--32571	19	5.6	19	84	13	151	44	17	23	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32600--32901	19	17.4	19	75	19	313	14	20	18	46	1.83
32578--32834	52	4.9	52	84	9	362	15	20	17	46	1.84
32619--32782	33	4.8	33	87	7	238	14	20	18	46	1.83
32671--32873	85	2.4	85	94	0	352	14	21	17	46	1.84
32775--32901	33	3.8	33	91	4	193	13	20	19	46	1.83
32775--32901	67	1.9	66	90	4	202	13	20	19	46	1.83
35180--35204	12	2.1	12	100	0	50	0	28	0	72	0.86
35379--35425	24	2.0	24	87	8	69	38	21	14	25	1.92
36108--36497	20	19.5	20	84	5	457	20	18	25	35	1.95
37264--37312	19	2.5	21	80	12	59	55	2	0	42	1.11
38053--38094	13	3.2	13	75	18	50	35	2	4	57	1.33
39033--39069	2	18.5	2	100	0	74	48	0	0	51	1.00
40037--40076	13	2.8	15	85	14	50	55	7	0	37	1.29
42944--42997	3	17.3	3	80	14	56	68	3	0	27	1.06
42967--42994	13	2.2	13	100	0	56	71	0	0	28	0.86
43281--43477	41	4.8	41	85	5	245	24	17	35	22	1.95
43503--43573	28	2.5	28	84	8	83	47	12	14	25	1.79
43523--43584	28	2.2	28	88	11	92	48	12	14	24	1.79
44005--44216	67	3.3	63	83	10	207	44	13	12	29	1.80
44118--44246	30	4.1	30	72	16	100	41	13	11	32	1.81
44066--44231	67	2.5	67	93	4	277	45	12	12	29	1.79
44236--44338	52	2.0	53	94	1	181	36	16	14	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44349--44513	27	5.8	29	84	5	187	45	15	10	27	1.80
44755--44858	36	3.0	36	81	4	124	35	11	20	32	1.88
44756--44874	36	3.4	36	79	6	111	36	12	21	30	1.90
44826--45058	105	2.2	104	84	6	287	37	12	19	30	1.89
45527--45576	4	13.0	4	91	8	86	24	0	26	50	1.50
46755--46792	11	3.4	11	89	7	58	5	13	10	71	1.30
46750--46797	12	3.9	12	81	8	53	4	12	12	70	1.29
47403--47497	47	2.1	46	84	4	120	36	9	27	26	1.87
48890--48951	32	2.0	32	96	3	117	61	9	14	14	1.57
52518--52571	3	17.3	3	80	14	56	68	3	0	27	1.06
52541--52568	13	2.2	13	100	0	56	71	0	0	28	0.86
57536--57624	28	3.0	28	79	17	108	29	16	19	34	1.94
57536--57623	32	2.9	30	86	6	117	29	17	19	34	1.94
79683--79707	12	2.1	12	100	0	50	60	0	0	40	0.97
83649--83673	12	2.1	12	100	0	50	36	8	40	16	1.77
90990--91036	21	2.2	21	92	0	76	17	6	8	68	1.37

Tables:   1

The End!