genome.fa.s1763.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001763.1 Hibiscus syriacus cultivar Beakdansim tig00003560_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91266

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2852--2898	19	2.5	19	100	0	94	25	31	8	34	1.86
7512--7711	42	4.8	42	89	0	292	31	28	16	24	1.96
7512--7708	21	9.4	21	85	0	259	30	28	16	23	1.96
7739--7803	20	3.2	21	84	6	64	23	7	21	47	1.76
14358--14405	19	2.5	19	77	16	55	29	4	2	64	1.23
14861--14905	20	2.5	18	80	19	58	44	4	22	28	1.72
14970--15044	38	2.0	37	84	5	98	48	4	1	46	1.29
28572--28620	19	2.8	17	81	9	55	30	28	12	28	1.93
28640--28692	2	27.0	2	96	3	99	49	0	0	50	1.00
30289--30332	17	2.5	19	78	17	58	40	13	4	40	1.65
31645--31719	37	2.0	37	100	0	150	48	24	17	10	1.79
52234--52286	21	2.5	21	81	6	72	20	26	18	33	1.96
52276--52389	20	5.7	20	85	2	156	41	18	21	19	1.91
52919--52973	19	2.8	20	81	13	78	45	21	20	12	1.84
52999--53130	19	7.1	19	80	11	148	12	22	20	43	1.86
55278--55338	21	2.9	21	72	0	68	22	36	19	21	1.95
56925--56967	20	2.2	20	91	0	68	51	18	18	11	1.76
57227--57270	22	2.0	22	95	0	79	18	15	45	20	1.85
57437--57591	41	3.8	41	77	3	161	23	16	24	36	1.94
57457--57570	20	5.7	20	76	6	104	23	15	26	34	1.95
57560--57632	21	3.5	21	92	1	103	19	20	19	41	1.91
57622--57674	21	2.5	22	81	6	74	37	18	22	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90358--90423	33	2.0	34	90	3	107	39	24	12	24	1.89

Tables:   1

The End!