genome.fa.s1764.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001764.1 Hibiscus syriacus cultivar Beakdansim tig00003561_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108777

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5127--5160	9	3.7	9	92	7	59	11	26	32	29	1.92
7156--7186	16	1.9	16	93	0	53	67	3	0	29	1.06
7570--7612	20	2.2	20	88	8	63	39	4	30	25	1.76
7754--7839	37	2.3	37	81	4	100	50	3	1	45	1.26
14022--14046	10	2.5	10	100	0	50	72	8	0	20	1.10
14688--14719	2	16.0	2	100	0	64	50	0	0	50	1.00
19028--19079	26	2.0	27	85	11	72	46	1	0	51	1.12
21581--21651	20	3.5	20	92	0	115	26	16	35	21	1.95
22244--22486	79	3.1	79	92	0	387	38	11	22	27	1.89
22299--22442	34	3.9	34	76	19	135	36	12	23	27	1.91
22333--22476	45	3.5	41	76	20	140	35	12	24	27	1.91
25309--25352	20	2.2	20	87	4	61	27	18	6	47	1.73
34996--35039	21	2.1	21	82	0	52	9	43	15	31	1.79
37028--37085	30	2.0	29	83	10	73	32	0	36	31	1.58
47331--47382	25	2.1	25	92	3	88	50	9	7	32	1.64
50426--50465	21	1.9	21	85	10	55	42	2	0	55	1.13
50429--50462	18	1.9	18	94	5	61	38	2	0	58	1.13
50698--50727	14	2.1	14	93	0	51	43	13	26	16	1.85
60017--60131	33	3.5	33	79	0	140	26	24	27	21	1.99
61027--61056	13	2.3	13	100	0	60	40	13	10	36	1.78
61405--61502	22	4.5	22	98	0	187	48	3	0	47	1.17
62760--63016	128	2.0	128	99	0	505	30	20	15	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66586--66648	23	2.6	24	75	12	67	42	6	14	36	1.71
66562--66724	87	1.9	87	93	0	281	41	9	14	34	1.78
66677--66724	23	2.1	23	92	0	78	35	8	18	37	1.81
67106--68001	181	4.9	181	86	3	1252	27	15	13	43	1.84
67617--67668	20	2.6	20	73	11	52	19	17	7	55	1.65
67829--68163	162	2.1	159	87	3	467	28	15	13	42	1.84
67988--68345	182	2.0	182	89	2	549	27	15	13	42	1.85
71364--71482	24	5.0	24	82	4	141	40	19	11	28	1.87
74042--74091	23	2.2	23	89	7	75	52	26	0	22	1.48
75962--76042	2	40.5	2	100	0	162	50	0	0	49	1.00
76256--76381	24	5.2	24	76	10	132	40	18	13	27	1.88
76263--76374	48	2.3	48	87	3	154	40	18	14	26	1.89
78890--78939	23	2.2	23	85	7	66	52	24	0	24	1.48
80818--80847	2	15.0	2	100	0	60	50	0	0	50	1.00
81029--81147	24	5.0	24	85	4	159	40	20	13	26	1.89
81012--81165	72	2.1	71	82	5	193	44	18	11	25	1.84
83686--83730	21	2.1	21	83	0	54	31	31	24	13	1.93
83760--83803	22	2.0	22	86	4	61	31	34	25	9	1.87
84623--84719	31	3.1	32	78	15	121	27	17	19	35	1.94
84711--84833	30	4.1	30	94	1	203	21	21	26	30	1.99
87920--87946	2	13.5	2	100	0	54	51	48	0	0	1.00
87946--87979	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88163--88274	24	4.7	24	88	4	154	41	19	14	25	1.89
92734--92789	2	28.0	2	100	0	112	50	0	0	50	1.00
92974--93084	24	4.6	24	87	4	152	40	19	14	25	1.89
93004--93105	48	2.1	48	83	3	125	43	19	13	23	1.87
95203--95253	24	2.2	24	89	3	77	52	25	0	21	1.47
94853--96821	993	2.0	979	88	3	2898	34	20	21	23	1.97
98299--98417	24	5.0	24	83	4	141	40	18	14	26	1.89
98282--98435	72	2.1	71	78	5	166	44	17	12	25	1.84
104345--104386	16	2.6	16	92	0	66	40	7	26	26	1.81
106178--106295	60	2.0	60	84	3	157	45	3	16	34	1.64

Tables:   1

The End!