Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001765.1 Hibiscus syriacus cultivar Beakdansim tig00003563_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105197

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4233--4290
18
3.0
19
85
10
73
20
8
0
70
1.13
4343--4378
16
2.2
16
90
9
56
19
0
0
80
0.71
11671--11866
42
4.8
42
71
15
149
32
14
18
33
1.92
11676--11904
123
1.8
125
83
3
293
31
15
19
33
1.93
14372--14397
2
13.0
2
100
0
52
50
0
0
50
1.00
21486--21534
21
2.3
20
82
6
62
48
14
36
0
1.44
22002--22190
43
4.4
43
79
3
202
32
24
17
24
1.97
22806--22904
30
3.3
30
82
10
123
40
5
8
46
1.55
22807--22904
29
3.3
29
87
4
124
40
5
8
45
1.56
24385--24416
2
16.0
2
100
0
64
50
0
0
50
1.00
25098--25133
18
1.9
19
88
5
56
66
5
5
22
1.34
27067--27156
7
13.0
7
96
1
164
1
28
0
70
0.95
28076--28205
42
3.1
42
88
3
154
23
20
21
34
1.97
27904--28240
43
7.9
43
82
4
261
24
17
23
34
1.96
28653--28722
21
3.3
21
81
0
77
2
30
20
47
1.64
28871--28909
15
2.6
15
100
0
78
25
12
28
33
1.93
31193--31219
10
2.7
10
100
0
54
70
11
18
0
1.16
33118--33214
41
2.3
41
82
8
117
31
20
15
31
1.94
33118--33234
42
2.8
42
81
11
127
35
21
14
29
1.93
33152--33427
135
2.0
135
85
1
374
34
17
14
32
1.91
34772--34953
41
4.5
40
79
7
199
29
17
15
36
1.91
34899--35088
42
4.6
41
73
16
142
27
16
19
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41824--41856
15
2.1
16
88
5
50
69
0
3
27
1.03
43441--43506
18
3.3
20
76
19
59
39
0
10
50
1.37
71793--71856
31
2.1
31
91
5
103
42
3
0
54
1.16
71795--71848
25
2.1
26
86
3
74
42
3
0
53
1.18
71783--71846
5
12.4
5
74
23
53
40
3
0
56
1.15
75576--75602
11
2.5
11
100
0
54
11
22
0
66
1.22
91402--91439
20
1.9
20
88
0
58
26
26
5
42
1.76
95612--95673
22
2.8
22
76
9
63
54
1
3
40
1.26
95661--95702
18
2.3
18
87
0
57
40
0
2
57
1.12
95656--95712
16
3.4
16
79
9
60
43
0
1
54
1.10
99282--99471
85
2.3
83
84
4
231
31
3
12
52
1.56
101735--101808
31
2.4
31
76
0
76
17
8
17
56
1.64

Tables:   1

The End!