genome.fa.s1767.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001767.1 Hibiscus syriacus cultivar Beakdansim tig00003566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54978

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127--451	122	2.7	122	89	3	482	25	19	15	38	1.92
448--631	70	2.6	72	89	5	284	38	11	15	34	1.84
4965--5014	10	4.8	10	83	9	64	2	20	0	78	0.86
6919--6948	12	2.6	12	94	5	53	50	10	16	23	1.75
6911--6969	31	1.9	31	85	0	82	45	13	20	20	1.84
7114--7199	43	2.0	43	90	0	136	38	20	8	32	1.82
7209--7254	24	1.9	24	82	8	58	28	13	15	43	1.83
7669--7771	36	2.9	36	91	0	152	27	11	20	40	1.87
9335--9375	17	2.4	17	84	12	57	46	0	2	51	1.14
10827--10907	3	27.0	3	80	14	51	58	0	3	38	1.16
10863--10900	10	3.8	10	83	10	51	65	0	5	28	1.14
10988--11016	13	2.2	13	100	0	58	48	0	0	51	1.00
10933--11362	119	3.5	119	83	11	446	50	6	4	38	1.48
11125--11362	127	1.8	128	86	7	347	50	7	4	37	1.50
13439--13501	2	32.5	2	76	17	62	47	4	0	47	1.23
13486--13541	28	1.9	28	92	7	94	42	7	3	46	1.48
13525--13827	70	4.2	71	78	10	271	40	11	4	43	1.60
13516--13871	37	9.8	36	75	12	266	40	11	4	43	1.60
13644--13850	105	2.0	104	82	7	249	41	11	4	42	1.61
13799--13893	38	2.5	38	81	10	97	48	9	3	38	1.52
25351--25397	3	15.7	3	100	0	94	65	0	0	34	0.93
26229--26489	70	3.7	69	81	10	255	40	11	4	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26260--26527	35	7.6	36	82	10	254	41	11	3	42	1.58
26256--26527	107	2.5	106	78	14	274	41	11	3	43	1.59
26260--26527	72	3.8	69	79	11	226	41	11	3	42	1.58
26514--26555	2	21.5	2	95	4	77	47	0	0	52	1.00
26555--26589	2	17.5	2	100	0	70	0	0	48	51	1.00
30978--31004	13	2.1	13	100	0	54	37	14	25	22	1.93
31708--31793	12	7.3	13	74	22	50	5	33	0	60	1.21
31746--31792	12	3.9	12	94	0	85	2	40	0	57	1.11
32215--32254	21	1.9	21	89	0	62	37	7	20	35	1.81
32222--32304	42	2.0	42	85	4	114	39	10	19	30	1.86
32269--32321	21	2.5	21	84	0	61	45	9	16	28	1.79
32223--32314	42	2.2	42	82	3	105	41	8	19	30	1.82
35302--35427	47	2.8	44	84	5	153	30	22	7	39	1.82
40418--41249	283	2.9	283	90	0	1292	41	15	20	22	1.90
45180--45233	8	6.6	8	81	12	65	85	0	12	1	0.69
45180--45233	10	5.4	9	79	16	54	85	0	12	1	0.69
45169--45224	23	2.3	23	93	6	94	80	0	12	7	0.90
45180--45233	23	2.7	18	86	13	63	85	0	12	1	0.69
45180--45233	19	2.7	20	76	21	58	85	0	12	1	0.69
47457--47545	42	2.1	41	85	2	124	25	22	21	30	1.99
47730--47797	22	3.2	22	68	16	70	27	19	17	35	1.94
47717--47838	42	2.9	42	93	3	203	27	19	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47459--48079	300	2.1	300	93	1	1048	31	16	18	33	1.93
47752--48517	258	3.0	258	89	1	1171	32	15	18	33	1.92
48261--48366	42	2.5	42	84	1	142	24	19	21	33	1.97
48788--48872	3	28.3	3	97	0	161	31	0	0	68	0.90

Tables:   1

The End!