Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001768.1 Hibiscus syriacus cultivar Beakdansim tig00003567_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72170

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8591--9021
54
8.1
54
86
2
575
35
20
17
26
1.95
8591--9017
160
2.7
160
85
3
538
35
20
17
26
1.95
8595--9021
214
2.0
213
85
3
581
35
20
18
26
1.95
11691--11727
15
2.5
15
95
4
67
40
21
13
24
1.89
14339--14429
31
2.9
31
85
1
110
29
13
19
37
1.90
19844--19877
18
1.9
17
88
5
50
11
26
14
47
1.79
23167--23211
21
2.1
21
91
0
72
17
31
17
33
1.94
23291--23378
43
2.1
42
82
10
110
42
0
2
55
1.12
23299--23360
25
2.4
26
81
13
74
43
0
3
53
1.17
23301--23411
43
2.5
45
82
10
122
37
0
2
58
1.18
25161--25516
159
2.2
159
85
3
493
27
20
5
46
1.73
28671--28716
20
2.3
20
96
0
83
21
23
4
50
1.67
32477--32557
41
2.0
41
92
0
135
23
30
8
37
1.85
33093--33147
3
18.7
3
92
3
94
65
0
1
32
1.03
34963--35007
22
2.1
21
88
12
65
35
4
8
51
1.54
35905--35940
18
2.0
18
100
0
72
22
11
5
61
1.50
48608--48635
13
2.2
13
100
0
56
32
7
17
42
1.77
49659--49697
3
13.7
3
84
10
55
33
0
2
64
1.08
49648--49697
25
2.0
25
92
7
84
30
2
4
64
1.23
51029--51075
9
5.0
9
78
17
51
23
2
2
72
1.06
51020--51095
28
2.8
28
80
6
75
32
3
1
61
1.22
51059--51104
20
2.3
21
81
11
60
41
2
0
56
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51062--51118
17
3.3
16
75
20
53
43
1
0
54
1.10
51081--51132
26
2.0
26
84
3
68
50
0
0
50
1.00
51131--51163
5
6.6
5
90
10
50
21
0
0
78
0.75
51358--51401
23
1.9
23
85
0
61
47
4
0
47
1.22
55134--55165
15
2.1
15
94
0
55
25
18
9
46
1.79
58947--58978
9
3.6
9
91
0
55
21
21
0
56
1.43
62488--62544
10
5.4
11
82
16
59
78
0
17
3
0.88
62487--62522
12
3.0
12
88
11
56
75
0
16
8
1.04
62506--62555
13
3.9
13
80
19
61
84
0
14
2
0.72
62488--62550
26
2.5
26
85
10
78
79
0
15
4
0.90
62513--62545
15
2.1
15
94
5
57
84
0
15
0
0.61
62513--62555
16
2.8
16
89
10
63
83
0
13
2
0.74
62871--62951
20
4.1
18
76
13
72
30
7
4
56
1.48
62894--62945
18
2.8
18
82
5
68
34
3
5
55
1.42
63617--63680
20
3.2
20
63
20
53
42
9
23
25
1.84
63479--63775
121
2.4
121
88
3
418
39
14
18
27
1.89
64150--64188
3
13.7
3
84
10
55
33
0
2
64
1.08
64139--64188
25
2.0
25
92
7
84
30
2
4
64
1.23
65588--65635
12
4.2
11
80
17
53
52
0
0
47
1.00
65857--65900
23
1.9
23
85
0
61
47
4
0
47
1.22
70365--70427
16
3.7
17
87
6
83
38
4
26
30
1.77
71009--71067
27
2.1
28
96
3
111
44
33
8
13
1.74

Tables:   1

The End!