Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001770.1 Hibiscus syriacus cultivar Beakdansim tig00003569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60662

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5503--5786
54
5.3
54
82
4
236
27
20
20
32
1.97
5503--5778
108
2.6
107
81
3
313
27
19
19
32
1.97
6150--6193
19
2.3
19
96
0
79
25
31
13
29
1.94
7989--8062
25
3.2
25
63
29
63
32
17
6
43
1.75
7984--8099
45
2.6
45
89
6
182
31
18
8
41
1.81
32164--32192
7
4.1
7
100
0
58
41
31
0
27
1.56
33850--33911
27
2.4
25
81
10
63
53
1
3
41
1.27
34304--34333
15
2.0
15
93
0
51
30
0
0
70
0.88
35745--35883
52
2.8
49
82
10
149
38
8
9
43
1.68
36543--36655
60
1.9
56
82
10
138
39
4
1
53
1.31
37234--37318
40
2.1
40
88
0
134
32
14
18
34
1.91
37574--37623
20
2.5
20
90
0
82
30
44
10
16
1.80
41973--42229
30
8.8
29
74
14
172
38
9
1
50
1.43
41973--42090
59
2.0
60
83
6
152
39
9
0
50
1.41
41985--42229
29
8.4
29
71
20
113
37
9
1
51
1.42
42329--42464
29
4.5
29
77
6
112
51
2
7
38
1.45
42312--42449
29
4.6
29
77
10
116
52
2
6
37
1.42
42437--42499
23
2.7
23
78
14
67
53
0
7
38
1.30
42437--42483
21
2.1
22
84
11
60
55
0
8
36
1.31
42468--42515
18
2.7
17
80
6
51
43
0
12
43
1.42
42991--43043
23
2.4
22
78
12
56
35
9
0
54
1.33
44476--44509
16
2.1
17
88
5
52
38
2
8
50
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45854--46209
136
2.6
138
78
9
368
43
14
13
28
1.83
49902--49934
2
16.5
2
100
0
66
48
0
0
51
1.00
52303--52336
18
1.9
17
94
5
59
50
11
11
26
1.73
52354--52423
34
2.1
33
81
10
79
52
11
10
25
1.68
52981--53258
46
6.1
46
89
3
411
22
20
11
44
1.84
53151--53213
22
3.0
21
69
21
60
23
15
11
49
1.77
52986--53256
134
2.0
135
89
2
418
21
21
12
45
1.84
53600--53793
92
2.1
90
84
5
244
26
22
14
35
1.93
59851--60081
46
5.1
46
92
1
376
22
21
9
46
1.79
59851--60012
26
7.0
25
70
23
140
20
22
10
46
1.81
59862--60077
20
9.7
20
68
21
119
21
23
9
45
1.81
60502--60556
21
2.7
21
74
2
58
29
21
18
30
1.97

Tables:   1

The End!