Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001771.1 Hibiscus syriacus cultivar Beakdansim tig00003572_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 74776
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Found at i:799 original size:92 final size:93
Alignment explanation
Indices: 572--830 Score: 276
Period size: 92 Copynumber: 2.7 Consensus size: 93
562 GGCTAGATGA
* * * * * *
572 ATCCATAAAGC-TGGTGCGTTTAACCAATTGCTCTAGAGGGATAGATTAATATCATTGTATAG-A
1 ATCCATAAAGCAT-G-GCGTTTAACCAATTGCTATAGAGGGACA-ACTCA-AGC-TT-TATTGTA
635 TATTATAATCACCTTTATCAGGCTAGTTGAATATT
60 TATTATAATCACCTTTATCAGGCTA-TTGAATATT
*
670 ATTCATAAAGCATGGCGTTTAACCAATTGCTATAGAGGGACAACTCAAGCTTTATTGTATATTAT
1 ATCCATAAAGCATGGCGTTTAACCAATTGCTATAGAGGGACAACTCAAGCTTTATTGTATATTAT
* *
735 AATCACC-TTATTAGGCT-TTGAATCTT
66 AATCACCTTTATCAGGCTATTGAATATT
* * * *
761 ATCCATAAAGCCGA-GGCGTTTAACTAATTTCTTTAGAGGGGCAACTCAAGCTTTATTGTATATA
1 ATCCATAAAG-C-ATGGCGTTTAACCAATTGCTATAGAGGGACAACTCAAGCTTTATTGTATAT-
825 TATAAT
63 TATAAT
831 ATTATAATCT
Statistics
Matches: 142, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
91 17 0.12
92 46 0.32
93 20 0.14
94 16 0.11
95 2 0.01
96 3 0.02
97 26 0.18
98 11 0.08
99 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (93 bp):
ATCCATAAAGCATGGCGTTTAACCAATTGCTATAGAGGGACAACTCAAGCTTTATTGTATATTAT
AATCACCTTTATCAGGCTATTGAATATT
Found at i:3419 original size:10 final size:9
Alignment explanation
Indices: 3369--3431 Score: 56
Period size: 10 Copynumber: 6.7 Consensus size: 9
3359 TAAAACAAAT
3369 TAAATAAGA
1 TAAATAAGA
3378 TAAGATAAGA
1 TAA-ATAAGA
*
3388 TAAAGAA-A
1 TAAATAAGA
*
3396 TAAAATAAAAA
1 T-AAAT-AAGA
3407 TAAATGAAGA
1 TAAAT-AAGA
*
3417 TAAATAGGA
1 TAAATAAGA
3426 TAAATA
1 TAAATA
3432 TAATAAAGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
8 2 0.04
9 18 0.40
10 23 0.51
11 2 0.04
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.21
Consensus pattern (9 bp):
TAAATAAGA
Found at i:3572 original size:23 final size:21
Alignment explanation
Indices: 3479--3584 Score: 77
Period size: 23 Copynumber: 4.6 Consensus size: 21
3469 AACAAGGAAA
* *
3479 AAATAAAATATATAATAATAAAT
1 AAATAAAATAAAGAA-AA-AAAT
3502 AAATAAAACTAGAAAGGAAAAAAAT
1 AAATAAAA-T--AAA-GAAAAAAAT
*
3527 AAATACAATAAAGATAAAAAAAT
1 AAATAAAATAAAG--AAAAAAAT
*
3550 AAATAAAATAAGAGAAATTAAAT
1 AAATAAAATAA-AGAAA-AAAAT
*
3573 AAATTAAATAAA
1 AAATAAAATAAA
3585 AGTATATATA
Statistics
Matches: 69, Mismatches: 6, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
21 1 0.01
22 7 0.10
23 40 0.58
24 4 0.06
25 11 0.16
26 4 0.06
27 2 0.03
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.21
Consensus pattern (21 bp):
AAATAAAATAAAGAAAAAAAT
Found at i:3576 original size:9 final size:9
Alignment explanation
Indices: 3337--3615 Score: 86
Period size: 9 Copynumber: 31.2 Consensus size: 9
3327 AAAGTAATGA
3337 AAAT-AAAT
1 AAATAAAAT
3345 AAGATAAAAAT
1 AA-AT-AAAAT
* *
3356 AATTAAAAC
1 AAATAAAAT
*
3365 AAATTAAAT
1 AAATAAAAT
*
3374 AAGATAAGAT
1 AA-ATAAAAT
*
3384 AAGAT-AAAG
1 AA-ATAAAAT
3393 AAATAAAAT
1 AAATAAAAT
3402 --A-AAAAT
1 AAATAAAAT
*
3408 AAATGAAGAT
1 AAAT-AAAAT
**
3418 AAATAGGAT
1 AAATAAAAT
*
3427 AAATATAAT
1 AAATAAAAT
*
3436 AAAGAAAA-
1 AAATAAAAT
3444 AAAT--AAT
1 AAATAAAAT
*
3451 AAA-AATAT
1 AAATAAAAT
* *
3459 AAAAAAAAG
1 AAATAAAAT
* *
3468 AAACAAGGAAA
1 AAATAA--AAT
3479 AAATAAAAT
1 AAATAAAAT
*
3488 ATATAATAAT
1 AAATAA-AAT
3498 AAAT-AAAT
1 AAATAAAAT
** *
3506 AAA-ACTAG
1 AAATAAAAT
*
3514 AAAGGAAAA-
1 AAA-TAAAAT
3523 AAAT-AAAT
1 AAATAAAAT
3531 ACAATAAAGAT
1 A-AATAAA-AT
3542 AAA-AAAAT
1 AAATAAAAT
3550 AAATAAAAT
1 AAATAAAAT
* *
3559 AAGAGAAATT
1 AA-ATAAAAT
*
3569 AAATAAATT
1 AAATAAAAT
3578 AAATAAAAGT
1 AAATAAAA-T
* *
3588 ATATATAAT
1 AAATAAAAT
3597 --ATAATAAT
1 AAATAA-AAT
*
3605 AAATAATAT
1 AAATAAAAT
3614 AA
1 AA
3616 TATATATAAT
Statistics
Matches: 202, Mismatches: 40, Indels: 57
0.68 0.13 0.19
Matches are distributed among these distances:
6 7 0.03
7 10 0.05
8 32 0.16
9 88 0.44
10 49 0.24
11 16 0.08
ACGTcount: A:0.70, C:0.01, G:0.07, T:0.21
Consensus pattern (9 bp):
AAATAAAAT
Found at i:3598 original size:5 final size:5
Alignment explanation
Indices: 3590--3640 Score: 61
Period size: 5 Copynumber: 10.2 Consensus size: 5
3580 ATAAAAGTAT
*
3590 ATATA ATATA ATAATA A-ATA ATATA ATAT- ATATA ATATT ATATA TATATA
1 ATATA ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA ATATA -ATATA
3640 A
1 A
3641 ACAAAGTAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
4 8 0.20
5 23 0.57
6 9 0.22
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:3609 original size:12 final size:13
Alignment explanation
Indices: 3570--3641 Score: 51
Period size: 12 Copynumber: 5.5 Consensus size: 13
3560 AGAGAAATTA
*
3570 AATAAAT-TAAAT
1 AATAAATATATAT
*
3582 AA-AAGTATATAT
1 AATAAATATATAT
*
3594 AATATAATAATAAAT
1 AATA-AAT-ATATAT
3609 AATATAATATATAT
1 AATA-AATATATAT
*
3623 AAT-ATTATATAT
1 AATAAATATATAT
3635 ATATAAA
1 A-ATAAA
3642 CAAAGTAGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
11 3 0.06
12 17 0.36
13 3 0.06
14 11 0.23
15 13 0.28
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (13 bp):
AATAAATATATAT
Found at i:3627 original size:7 final size:7
Alignment explanation
Indices: 3588--3640 Score: 54
Period size: 7 Copynumber: 7.1 Consensus size: 7
3578 AAATAAAAGT
3588 ATATATA
1 ATATATA
3595 ATATAATA
1 ATAT-ATA
*
3603 ATAAATA
1 ATATATA
3610 ATATA-A
1 ATATATA
3616 TATATATA
1 -ATATATA
3624 ATATTATA
1 ATA-TATA
3632 TATATATA
1 -ATATATA
3640 A
1 A
3641 ACAAAGTAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
6 1 0.03
7 20 0.51
8 15 0.38
9 3 0.08
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
ATATATA
Found at i:3688 original size:11 final size:11
Alignment explanation
Indices: 3655--3707 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 11
3645 AGTAGTAGAG
3655 AAAATAATAAT
1 AAAATAATAAT
*
3666 AAAAT--TATT
1 AAAATAATAAT
3675 AAAATAATAAT
1 AAAATAATAAT
*
3686 AAAATGAT--T
1 AAAATAATAAT
3695 AAAATAA-AAT
1 AAAATAATAAT
3705 AAA
1 AAA
3708 TATATATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
9 15 0.44
10 4 0.12
11 15 0.44
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (11 bp):
AAAATAATAAT
Found at i:3695 original size:23 final size:20
Alignment explanation
Indices: 3655--3707 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
3645 AGTAGTAGAG
3655 AAAATAATAATAAAATTATT
1 AAAATAATAATAAAATTATT
*
3675 AAAATAATAATAAAATGATT
1 AAAATAATAATAAAATTATT
3695 AAAATAA-AATAAA
1 AAAATAATAATAAA
3708 TATATATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 6 0.19
20 26 0.81
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (20 bp):
AAAATAATAATAAAATTATT
Found at i:3767 original size:19 final size:20
Alignment explanation
Indices: 3726--3767 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
3716 TATATCGTAT
*
3726 AAATAAAAAAATAAGAAATA
1 AAATAAAAAAATAAGAAAGA
* *
3746 AAATTAAAAAA-AATAAAGA
1 AAATAAAAAAATAAGAAAGA
3765 AAA
1 AAA
3768 ATATAAAAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (20 bp):
AAATAAAAAAATAAGAAAGA
Found at i:3768 original size:34 final size:34
Alignment explanation
Indices: 3724--3790 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
3714 TATATATCGT
*
3724 ATAAATAAAAAAATAAGAA-ATAAAATTAAAAAAA
1 ATAAAGAAAAAAATAA-AAGATAAAATTAAAAAAA
* *
3758 ATAAAGAAAAATATAAAAGGATTAAATTAAAAA
1 ATAAAGAAAAAAATAAAA-GATAAAATTAAAAA
3791 GGGAAACAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 2 0.07
34 14 0.50
35 12 0.43
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (34 bp):
ATAAAGAAAAAAATAAAAGATAAAATTAAAAAAA
Found at i:3775 original size:19 final size:20
Alignment explanation
Indices: 3726--3775 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 20
3716 TATATCGTAT
3726 AAATAAAAAAATAAGAAATA
1 AAATAAAAAAATAAGAAATA
3746 AAATTAAAAAAAATAAAGAAA-A
1 AAA-T-AAAAAAAT-AAGAAATA
*
3768 ATATAAAA
1 AAATAAAA
3776 GGATTAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 7 0.27
21 2 0.08
22 11 0.42
23 6 0.23
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (20 bp):
AAATAAAAAAATAAGAAATA
Found at i:4580 original size:33 final size:33
Alignment explanation
Indices: 4527--4617 Score: 119
Period size: 33 Copynumber: 2.7 Consensus size: 33
4517 ATATTCTTCA
* * * *
4527 TGCATAGTGTAATTATATATTGTTCATGGATAC
1 TGCATATTGTTATTACATATTGTTCATGCATAC
4560 TGCATATTGTTATTACATATTGTTCATGCATAC
1 TGCATATTGTTATTACATATTGTTCATGCATAC
* *
4593 TACATATTGTTACATACATATTGTT
1 TGCATATTGTTA-TTACATATTGTT
4618 ATTATAATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 40 0.78
34 11 0.22
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.45
Consensus pattern (33 bp):
TGCATATTGTTATTACATATTGTTCATGCATAC
Found at i:4651 original size:13 final size:13
Alignment explanation
Indices: 4633--4657 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4623 AATGTTAATG
4633 TGTTATTGCATAT
1 TGTTATTGCATAT
4646 TGTTATTGCATA
1 TGTTATTGCATA
4658 ACTTATTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (13 bp):
TGTTATTGCATAT
Found at i:4670 original size:23 final size:23
Alignment explanation
Indices: 4643--4693 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
4633 TGTTATTGCA
*
4643 TATTGTTATTGCATAACTTATT-T
1 TATTGTTATTG-ATAACATATTGT
*
4666 TATTGTTATTGATTACATATTGT
1 TATTGTTATTGATAACATATTGT
4689 TATTG
1 TATTG
4694 CATAACTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 8 0.32
23 17 0.68
ACGTcount: A:0.25, C:0.06, G:0.12, T:0.57
Consensus pattern (23 bp):
TATTGTTATTGATAACATATTGT
Found at i:5470 original size:33 final size:31
Alignment explanation
Indices: 5433--5550 Score: 82
Period size: 33 Copynumber: 3.6 Consensus size: 31
5423 ATACTTGAGA
5433 CATTTGTGTTGTAGTTGAATTTGTTATTGACTG
1 CATTTGT-TT-TAGTTGAATTTGTTATTGACTG
* * * *
5466 CATTTGTTTTTTTA-TTGAGTTTGTTTTTTATTG
1 CATTTG---TTTTAGTTGAATTTGTTATTGACTG
*
5499 CATTTGTTTTAGATTGAATTT-TT-TT-AGCTTT
1 CATTTGTTTTAG-TTGAATTTGTTATTGA-C-TG
5530 CATTTGTTTTAGATTGAATTT
1 CATTTGTTTTAG-TTGAATTT
5551 TTTTTATTGT
Statistics
Matches: 71, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
29 1 0.01
30 7 0.10
31 24 0.34
32 7 0.10
33 27 0.38
34 2 0.03
35 2 0.03
36 1 0.01
ACGTcount: A:0.18, C:0.05, G:0.17, T:0.60
Consensus pattern (31 bp):
CATTTGTTTTAGTTGAATTTGTTATTGACTG
Found at i:5514 original size:16 final size:16
Alignment explanation
Indices: 5433--5556 Score: 76
Period size: 16 Copynumber: 7.7 Consensus size: 16
5423 ATACTTGAGA
5433 CATTTGTGTTGTAG-TTG
1 CATTTGT-TT-TAGATTG
* *
5450 AATTTGTTATT-GACTG
1 CATTTGTT-TTAGATTG
**
5466 CATTTGTTTTTTTATTG
1 CATTTG-TTTTAGATTG
**
5483 -AGTTTGTTTTTTATTG
1 CA-TTTGTTTTAGATTG
5499 CATTTGTTTTAGATTG
1 CATTTGTTTTAGATTG
* * *
5515 AATTT-TTTTAGCTTT
1 CATTTGTTTTAGATTG
5530 CATTTGTTTTAGATTG
1 CATTTGTTTTAGATTG
* *
5546 AATTTTTTTTA
1 CATTTGTTTTA
5557 TTGTATTTTT
Statistics
Matches: 85, Mismatches: 15, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
15 13 0.15
16 55 0.65
17 17 0.20
ACGTcount: A:0.18, C:0.05, G:0.16, T:0.61
Consensus pattern (16 bp):
CATTTGTTTTAGATTG
Found at i:6288 original size:26 final size:26
Alignment explanation
Indices: 6252--6305 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
6242 GTTACATACA
6252 TTGCATCTTCATTTCTAACACAAATC
1 TTGCATCTTCATTTCTAACACAAATC
* *
6278 TTGCATTTTCATTTCTAATACAAATC
1 TTGCATCTTCATTTCTAACACAAATC
6304 TT
1 TT
6306 ATAACCCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.22, G:0.04, T:0.44
Consensus pattern (26 bp):
TTGCATCTTCATTTCTAACACAAATC
Found at i:9775 original size:8 final size:8
Alignment explanation
Indices: 9764--9846 Score: 59
Period size: 8 Copynumber: 10.5 Consensus size: 8
9754 TTAATAGTGT
9764 TTTTAATA
1 TTTTAATA
9772 TTTTCTAAT-
1 -TTT-TAATA
*
9781 GTTTAATA
1 TTTTAATA
*
9789 ATTTAA-A
1 TTTTAATA
9796 TTTT-AT-
1 TTTTAATA
9802 TTTTAATA
1 TTTTAATA
9810 TTTT-ATA
1 TTTTAATA
9817 TATTTAATA
1 T-TTTAATA
*
9826 CTTTAATTA
1 TTTTAA-TA
*
9835 TTTAAATA
1 TTTTAATA
9843 TTTT
1 TTTT
9847 TAAGCGTTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 17
0.71 0.08 0.20
Matches are distributed among these distances:
6 5 0.08
7 14 0.24
8 24 0.41
9 12 0.20
10 4 0.07
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.61
Consensus pattern (8 bp):
TTTTAATA
Found at i:18253 original size:20 final size:20
Alignment explanation
Indices: 18211--18257 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
18201 CCTATGGCAA
* *
18211 AGTATAGATACTAAAGGGTC
1 AGTATCGATACTAAAGGGCC
18231 AGTATCGATACTGAAA-GGCC
1 AGTATCGATACT-AAAGGGCC
18251 AGTATCG
1 AGTATCG
18258 GTACCAACGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (20 bp):
AGTATCGATACTAAAGGGCC
Found at i:26314 original size:21 final size:20
Alignment explanation
Indices: 26229--26385 Score: 84
Period size: 21 Copynumber: 7.8 Consensus size: 20
26219 AATGACCAAT
** *
26229 AAAATCGCAACGCGA-AATA
1 AAAATCGCAACGCGATTTTC
***
26248 AAAATCGCAACGCGATCCCC
1 AAAATCGCAACGCGATTTTC
* ** *
26268 AGAATCGCAAATC-AGTTTCC
1 AAAATCGCAACGCGA-TTTTC
*
26288 AAAATCGCAACGCGATTCTTG
1 AAAATCGCAACGCGATT-TTC
* * *
26309 AAAATCGCAATGCGATAGTAC
1 AAAATCGCAACGCGAT-TTTC
* **
26330 AAATTCGCATTGCGATTTTCC
1 AAAATCGCAACGCGATTTT-C
* * *
26351 AAAATCGCAACGCGAATATG
1 AAAATCGCAACGCGATTTTC
26371 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
26386 ACACATAAAT
Statistics
Matches: 104, Mismatches: 28, Indels: 11
0.73 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTTC
Found at i:26414 original size:20 final size:20
Alignment explanation
Indices: 26352--26544 Score: 228
Period size: 20 Copynumber: 9.7 Consensus size: 20
26342 CGATTTTCCA
* ** *
26352 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
26372 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
26392 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
26412 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
26432 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
26452 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
26472 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
26492 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* *
26512 AAATCGCAACGAGAATCCGT
1 AAATCGCAACGCGTATCCGT
26532 AAATCGCAACGCG
1 AAATCGCAACGCG
26545 ATATTTAAAG
Statistics
Matches: 148, Mismatches: 21, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
19 2 0.01
20 144 0.97
21 2 0.01
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:27066 original size:20 final size:20
Alignment explanation
Indices: 27040--27096 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
27030 TTTGCAGAAG
*
27040 AGTCGCAACGAGAGAATGAC
1 AGTCGCAACGAGAGAATGAA
*
27060 TGTCGCAACGAGAGAATGAA
1 AGTCGCAACGAGAGAATGAA
*
27080 AATCGCAACGAGAGAAT
1 AGTCGCAACGAGAGAAT
27097 CGCAACGCGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.42, C:0.18, G:0.28, T:0.12
Consensus pattern (20 bp):
AGTCGCAACGAGAGAATGAA
Found at i:27099 original size:14 final size:14
Alignment explanation
Indices: 27080--27136 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
27070 AGAGAATGAA
27080 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
27094 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
27113 AATCGCAACGAGAG
1 AATCGCAACGAGAG
27127 AATCGCAACG
1 AATCGCAACG
27137 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:27114 original size:33 final size:33
Alignment explanation
Indices: 27062--27152 Score: 146
Period size: 33 Copynumber: 2.7 Consensus size: 33
27052 AGAATGACTG
*
27062 TCGCAACGAGAGAATGAAAATCGCAACGAGAGAA
1 TCGCAACGCGA-AATGAAAATCGCAACGAGAGAA
27096 TCGCAACGCGAAATGAAAATCGCAACGAGAGAA
1 TCGCAACGCGAAATGAAAATCGCAACGAGAGAA
**
27129 TCGCAACGCGAAACCAAAATCGCA
1 TCGCAACGCGAAATGAAAATCGCA
27153 TTGCGATTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 44 0.81
34 10 0.19
ACGTcount: A:0.45, C:0.23, G:0.23, T:0.09
Consensus pattern (33 bp):
TCGCAACGCGAAATGAAAATCGCAACGAGAGAA
Found at i:27170 original size:19 final size:19
Alignment explanation
Indices: 27148--27245 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
27138 GAAACCAAAA
*
27148 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
27167 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
27181 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
27200 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
27214 TCTCGTTGCGATTGTCATT
1 TCGCGTTGCGATTTTCATT
27233 TCGCGTTGCGATT
1 TCGCGTTGCGATT
27246 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.23, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:27189 original size:14 final size:14
Alignment explanation
Indices: 27170--27259 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
27160 TTTCATTTCG
27170 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
27184 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
27203 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
27217 CGTTGCGATTGTCATTTCG
1 CGTTGCGA-T-TC---TCT
27236 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
27250 CGTTGCGATT
1 CGTTGCGATT
27260 TTCATTTCAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
15 1 0.02
16 5 0.08
17 5 0.08
18 1 0.02
19 20 0.32
ACGTcount: A:0.09, C:0.24, G:0.23, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:27195 original size:33 final size:33
Alignment explanation
Indices: 27153--27267 Score: 221
Period size: 33 Copynumber: 3.5 Consensus size: 33
27143 CAAAATCGCA
27153 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
27186 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
27219 TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
27252 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
27268 AACCCAAAGA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.10, C:0.23, G:0.21, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:29119 original size:93 final size:93
Alignment explanation
Indices: 28960--29519 Score: 1081
Period size: 93 Copynumber: 6.1 Consensus size: 93
28950 TAGATTGCTT
*
28960 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
29025 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
29053 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
29118 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
29146 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAAC--TGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
29209 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
29237 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
29302 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
29330 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
29395 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
29423 AGTAATTTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
29488 TTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
29515 AGTAA
1 AGTAA
29520 TGCAATCCAT
Statistics
Matches: 463, Mismatches: 2, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
91 91 0.20
92 6 0.01
93 366 0.79
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:29454 original size:277 final size:277
Alignment explanation
Indices: 28960--29519 Score: 1077
Period size: 277 Copynumber: 2.0 Consensus size: 277
28950 TAGATTGCTT
28960 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
29025 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
29090 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
29155 GTTCGGTTGCTGCCAATTCTGCTAAAC-TGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
196 GTTCGGTTGCTGCCAATTCTGCTAAACGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
29219 TTTTGTCTTTTGGTTGAA
261 TTTTGTCTTTTGGTTG-A
*
29237 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
29302 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
*
29367 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAATTTT
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
29432 GTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTT
196 GTTCGGTTGCTGCCAATTCTGCTAAAC-GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTT
29497 GTTTTGTCTTTTGGTTGA
260 GTTTTGTCTTTTGGTTGA
29515 AGTAA
1 AGTAA
29520 TGCAATCCAT
Statistics
Matches: 279, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
277 220 0.79
278 6 0.02
279 53 0.19
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (277 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
GTTCGGTTGCTGCCAATTCTGCTAAACGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
TTTTGTCTTTTGGTTGA
Found at i:29627 original size:33 final size:32
Alignment explanation
Indices: 29584--29676 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 32
29574 ACGAAACTTA
**
29584 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
29616 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
29649 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
29677 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.04
33 55 0.96
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:29676 original size:19 final size:19
Alignment explanation
Indices: 29567--29676 Score: 87
Period size: 19 Copynumber: 6.3 Consensus size: 19
29557 TAGTTTACTT
* *
29567 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
**
29587 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
29606 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
29620 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
29639 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
29653 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
29672 TCGCA
1 TCGCA
29677 TTGCGATTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 21
0.71 0.08 0.21
Matches are distributed among these distances:
14 19 0.26
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 29 0.40
20 12 0.17
ACGTcount: A:0.45, C:0.28, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:29694 original size:19 final size:18
Alignment explanation
Indices: 29672--29790 Score: 110
Period size: 19 Copynumber: 6.8 Consensus size: 18
29662 GAAACCAAAA
*
29672 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTC-TT
29691 TCGCGTTGCGA--TTCTT
1 TCGCGTTGCGATTTTCTT
*
29707 T--CGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTT-CTT
*
29724 TCGCGTTGCGA--TTCTG
1 TCGCGTTGCGATTTTCTT
29740 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTC-TT
*
29757 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTT-CTT
29776 TCGCGTTGCGATTTT
1 TCGCGTTGCGATTTT
29791 AAGTTTCGTG
Statistics
Matches: 83, Mismatches: 6, Indels: 22
0.75 0.05 0.20
Matches are distributed among these distances:
14 16 0.19
16 10 0.12
17 10 0.12
19 47 0.57
ACGTcount: A:0.08, C:0.19, G:0.25, T:0.47
Consensus pattern (18 bp):
TCGCGTTGCGATTTTCTT
Found at i:29713 original size:14 final size:14
Alignment explanation
Indices: 29694--29750 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
29684 TTTCATTTCG
29694 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
*
29708 CGTTGCGATTTTGGTTT
1 CGTTGCGA--TT-CTTT
*
29725 CGCGTTGCGATTCTGT
1 --CGTTGCGATTCTTT
29741 CGTTGCGATT
1 CGTTGCGATT
29751 TTCATTTCGC
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 18 0.51
16 4 0.11
17 5 0.14
19 8 0.23
ACGTcount: A:0.07, C:0.19, G:0.28, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:29719 original size:33 final size:33
Alignment explanation
Indices: 29677--29769 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
29667 CAAAATCGCA
*
29677 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
**
29710 TTGCGATTTTGGTTTCGCGTTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
29743 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
29770 TTGGTTTCGC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.09, C:0.19, G:0.25, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:29798 original size:20 final size:19
Alignment explanation
Indices: 29672--29806 Score: 105
Period size: 19 Copynumber: 7.6 Consensus size: 19
29662 GAAACCAAAA
*
29672 TCGCATTGCGATTTTCA-TT
1 TCGCGTTGCGATTTT-AGTT
*
29691 TCGCGTTGCGA--TT-CTT
1 TCGCGTTGCGATTTTAGTT
*
29707 T--CGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTAGTT
*
29724 TCGCGTTGCGATTCT-G--
1 TCGCGTTGCGATTTTAGTT
29740 T--CGTTGCGATTTTCA-TT
1 TCGCGTTGCGATTTT-AGTT
*
29757 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTAGTT
29776 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTT-AGTT
*
29796 TCGTGTTGCGA
1 TCGCGTTGCGA
29807 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 7, Indels: 27
0.74 0.05 0.21
Matches are distributed among these distances:
14 19 0.20
16 6 0.06
17 6 0.06
18 1 0.01
19 50 0.53
20 13 0.14
ACGTcount: A:0.10, C:0.19, G:0.26, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTAGTT
Found at i:31747 original size:14 final size:14
Alignment explanation
Indices: 31728--31763 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
31718 ATTGTTTAAT
31728 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
31742 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
31756 TGATTTGT
1 TGATTTGT
31764 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:31883 original size:19 final size:19
Alignment explanation
Indices: 31867--31964 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
31857 AAAAATGACT
31867 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
31886 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
31905 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
31919 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
31938 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
31958 ATCGCAA
1 ATCGCAA
31965 CGAGAGAATC
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 39 0.55
20 16 0.23
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:31945 original size:52 final size:53
Alignment explanation
Indices: 31867--31983 Score: 227
Period size: 53 Copynumber: 2.2 Consensus size: 53
31857 AAAAATGACT
31867 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
31919 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
31972 ATCGCAATGCGA
1 ATCGCAATGCGA
31984 TTTCATTTCG
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 29 0.45
53 35 0.55
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.14
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:32008 original size:19 final size:19
Alignment explanation
Indices: 31973--32193 Score: 241
Period size: 19 Copynumber: 12.7 Consensus size: 19
31963 AACGAGAGAA
*
31973 TCGCAATGCGA-TTTCATT
1 TCGCATTGCGATTTTCATT
31991 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
32010 TCGCATTGCGA--TT-ATC
1 TCGCATTGCGATTTTCATT
32026 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
32043 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
32062 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
32078 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
32095 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
32114 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
*
32130 TCG--TTGCGATTTTTATT
1 TCGCATTGCGATTTTCATT
32147 TCCGCATTGCGATTTTCA--
1 T-CGCATTGCGATTTTCATT
*
32165 T-G--TTGGGATTTTCATT
1 TCGCATTGCGATTTTCATT
32181 TCGCATTGCGATT
1 TCGCATTGCGATT
32194 CTCTCGTTGC
Statistics
Matches: 172, Mismatches: 9, Indels: 43
0.77 0.04 0.19
Matches are distributed among these distances:
14 33 0.19
16 19 0.11
17 16 0.09
18 13 0.08
19 80 0.47
20 11 0.06
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:32043 original size:52 final size:52
Alignment explanation
Indices: 31979--32165 Score: 331
Period size: 52 Copynumber: 3.6 Consensus size: 52
31969 AGAATCGCAA
31979 TGCGA-TTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTATCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTATCTCGT
*
32030 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTATCTCGT
*
32082 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTATCTCGT
*
32134 TGCGATTTTTATTTCCGCATTGCGATTTTCAT
1 TGCGATTTTCATTT-CGCATTGCGATTTTCAT
32166 GTTGGGATTT
Statistics
Matches: 131, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
51 5 0.04
52 109 0.83
53 17 0.13
ACGTcount: A:0.14, C:0.21, G:0.17, T:0.47
Consensus pattern (52 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTATCTCGT
Found at i:32215 original size:33 final size:33
Alignment explanation
Indices: 31996--32207 Score: 207
Period size: 33 Copynumber: 6.2 Consensus size: 33
31986 TCATTTCGCA
*
31996 TTGCGATTTTCATTTCGCATTGCGATTATCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
*
32029 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCG
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG
* * * * *
32065 CATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCA
1 --TTGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCG
*
32100 TTGCGATTTTCATTTCGCATTGCGATTTTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
* *
32133 TTGCGATTTTTATTTCCGCATTGCGATTTTCAT-G
1 TTGCGATTTTCATTT-CGCATTGCGATTCTC-TCG
*
32167 TTGGGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
32200 TTGCGATT
1 TTGCGATT
32208 GTAATTTCCG
Statistics
Matches: 147, Mismatches: 18, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
31 9 0.06
32 6 0.04
33 72 0.49
34 29 0.20
35 5 0.03
36 4 0.03
37 2 0.01
38 8 0.05
39 3 0.02
40 9 0.06
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:34516 original size:12 final size:12
Alignment explanation
Indices: 34499--34523 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34489 TCTTCGGGGA
34499 CTTTTTCTTCTT
1 CTTTTTCTTCTT
34511 CTTTTTCTTCTT
1 CTTTTTCTTCTT
34523 C
1 C
34524 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:34731 original size:24 final size:24
Alignment explanation
Indices: 34697--34743 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
34687 CTGAAACATC
34697 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
34721 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
34744 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:35475 original size:20 final size:20
Alignment explanation
Indices: 35450--35694 Score: 240
Period size: 20 Copynumber: 12.2 Consensus size: 20
35440 TGCCCTACCG
* *
35450 GATTTACAGATTCTCGTTGC
1 GATTTACGGATTCGCGTTGC
**
35470 GATTTACGGATTATCGTTGC
1 GATTTACGGATTCGCGTTGC
**
35490 GATTTACGGATTATCGTTGC
1 GATTTACGGATTCGCGTTGC
* *
35510 GATTTACAGATTCTCGTTGC
1 GATTTACGGATTCGCGTTGC
**
35530 GATTTACGGATTATCGTTGC
1 GATTTACGGATTCGCGTTGC
*
35550 GATTTACGGATACGCGTTGC
1 GATTTACGGATTCGCGTTGC
* * *
35570 GATATACGGATACGCATTGC
1 GATTTACGGATTCGCGTTGC
** *
35590 GATTTACCCATACGCGTTGC
1 GATTTACGGATTCGCGTTGC
** * *
35610 GATTTACCCATACACGTTGC
1 GATTTACGGATTCGCGTTGC
*
35630 GATTTACGGATACGCGTTGC
1 GATTTACGGATTCGCGTTGC
*
35650 GATTTATGTG-TTCGCGTTGC
1 GATTTACG-GATTCGCGTTGC
* **
35670 GATTTTCATATTCGCGTTGC
1 GATTTACGGATTCGCGTTGC
35690 GATTT
1 GATTT
35695 TGGAAAATCG
Statistics
Matches: 198, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
20 197 0.99
21 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (20 bp):
GATTTACGGATTCGCGTTGC
Found at i:35711 original size:21 final size:21
Alignment explanation
Indices: 35681--35763 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
35671 ATTTTCATAT
*
35681 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
35702 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
35723 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
35744 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
35764 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:35754 original size:42 final size:43
Alignment explanation
Indices: 35661--35759 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
35651 ATTTATGTGT
* *
35661 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
35702 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
35744 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
35760 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:36999 original size:22 final size:22
Alignment explanation
Indices: 36971--37027 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
36961 CCAAAATGGG
36971 GTATCGGTACCATAGTATGGTA
1 GTATCGGTACCATAGTATGGTA
36993 GTATCGGTACCATAGTATGGTA
1 GTATCGGTACCATAGTATGGTA
*
37015 GTATCGATACCAT
1 GTATCGGTACCAT
37028 GGTAAGGGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (22 bp):
GTATCGGTACCATAGTATGGTA
Found at i:37506 original size:68 final size:68
Alignment explanation
Indices: 37394--37605 Score: 298
Period size: 68 Copynumber: 3.1 Consensus size: 68
37384 TAGGTAAGTG
* *
37394 CCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTTTCATTCATGCCAGTTAGATGAAAGGCTAA
1 CCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAA
*
37459 GTA
66 CTA
* * *
37462 TCTTTGAGGCCTAACTGTGCATTTGATAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGACTAA
1 CCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAA
*
37527 CTG
66 CTA
* * * * *
37530 CCTTTGAGGCCTAACTGTGCATTGGACAGAAAGGTGTCAATCATTCTAGTGAGATGAAAGGTTAA
1 CCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAA
* *
37595 ATG
66 CTA
37598 CCTTTGAG
1 CCTTTGAG
37606 TAAAAGACTA
Statistics
Matches: 128, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
68 128 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (68 bp):
CCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAA
CTA
Found at i:37691 original size:45 final size:47
Alignment explanation
Indices: 37627--37728 Score: 122
Period size: 46 Copynumber: 2.2 Consensus size: 47
37617 AATGTATAAC
* * *
37627 AATGTATATTGGTGTAT-AAAAGGCATG-A-AATGATGCCATAAATG-A
1 AATGTATAATAGTATATAAAAAGGCATGAACAAT--TGCCATAAATGAA
*
37672 AATGTATAATAGTATATAAAAAGGCATGAACAATTGCCATTAATGAA
1 AATGTATAATAGTATATAAAAAGGCATGAACAATTGCCATAAATGAA
37719 AATGTATAAT
1 AATGTATAAT
37729 GGAGCATTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
45 14 0.29
46 20 0.41
47 12 0.24
48 3 0.06
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.29
Consensus pattern (47 bp):
AATGTATAATAGTATATAAAAAGGCATGAACAATTGCCATAAATGAA
Found at i:40891 original size:53 final size:53
Alignment explanation
Indices: 40811--40917 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
40801 GTATGCAAGC
40811 TATATTTTAAGACATGGTTGAGGATTTCCTTGAGAAATTCATGGACAACTTTT
1 TATATTTTAAGACATGGTTGAGGATTTCCTTGAGAAATTCATGGACAACTTTT
40864 TATATTTTAAGACATGGTTGAGGATTTCCTTGAGAAATTCATGGACAACTTTT
1 TATATTTTAAGACATGGTTGAGGATTTCCTTGAGAAATTCATGGACAACTTTT
40917 T
1 T
40918 TGTTTCTTGA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (53 bp):
TATATTTTAAGACATGGTTGAGGATTTCCTTGAGAAATTCATGGACAACTTTT
Found at i:52222 original size:63 final size:66
Alignment explanation
Indices: 52131--52263 Score: 159
Period size: 63 Copynumber: 2.0 Consensus size: 66
52121 CACTCTTTTA
*
52131 AAATACAAACATCGAATGCTATCGATGCATCAATGCATAAG-G-AGTGCATCGATG-TACC-CCA
1 AAATACAAACATCGAATGCGATCGATGCATCAATGCAT-AGTGTAGTGCATCGATGATACCTCCA
52192 TT
65 TT
** * *
52194 AAATACAAACATCGAATAG-GATTTATGCATCGATGCATGGTGTAGTGCATCGATGCATACCTCC
1 AAATACAAACATCGAAT-GCGATCGATGCATCAATGCATAGTGTAGTGCATCGATG-ATACCTCC
52258 ATT
64 ATT
52261 AAA
1 AAA
52264 AGATGAAAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
62 1 0.02
63 33 0.56
64 13 0.22
66 4 0.07
67 8 0.14
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (66 bp):
AAATACAAACATCGAATGCGATCGATGCATCAATGCATAGTGTAGTGCATCGATGATACCTCCAT
T
Found at i:52865 original size:23 final size:23
Alignment explanation
Indices: 52839--52892 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
52829 TGGCACTACG
52839 GTGCAATTCTACGCGACACTCCA
1 GTGCAATTCTACGCGACACTCCA
* * * *
52862 GTGCAATTCTACGTGGCACTTCG
1 GTGCAATTCTACGCGACACTCCA
52885 GTGCAATT
1 GTGCAATT
52893 ATATGAGTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (23 bp):
GTGCAATTCTACGCGACACTCCA
Found at i:59119 original size:63 final size:66
Alignment explanation
Indices: 59028--59160 Score: 159
Period size: 63 Copynumber: 2.0 Consensus size: 66
59018 CACTCTTTTA
*
59028 AAATACAAACATCGAATGCTATCGATGCATCAATGCATAAG-G-AGTGCATCGATG-TACC-CCA
1 AAATACAAACATCGAATGCGATCGATGCATCAATGCAT-AGTGTAGTGCATCGATGATACCTCCA
59089 TT
65 TT
** * *
59091 AAATACAAACATCGAATAG-GATTTATGCATCGATGCATGGTGTAGTGCATCGATGCATACCTCC
1 AAATACAAACATCGAAT-GCGATCGATGCATCAATGCATAGTGTAGTGCATCGATG-ATACCTCC
59155 ATT
64 ATT
59158 AAA
1 AAA
59161 AGATGAAAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
62 1 0.02
63 33 0.56
64 13 0.22
66 4 0.07
67 8 0.14
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (66 bp):
AAATACAAACATCGAATGCGATCGATGCATCAATGCATAGTGTAGTGCATCGATGATACCTCCAT
T
Found at i:59755 original size:23 final size:22
Alignment explanation
Indices: 59729--59796 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 22
59719 ATTATTATAT
* *
59729 GGCACTACGGTGCAATTCTATGC
1 GGCACT-CGGTGCAATTATACGC
59752 GGCACTCTGGTGCAATTATACGC
1 GGCACTC-GGTGCAATTATACGC
59775 GGCACTTCGGTGCAATTATACG
1 GGCAC-TCGGTGCAATTATACG
59797 AGCTGTGGTG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
22 1 0.02
23 38 0.93
24 2 0.05
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.26
Consensus pattern (22 bp):
GGCACTCGGTGCAATTATACGC
Found at i:64180 original size:14 final size:14
Alignment explanation
Indices: 64148--64174 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64138 GGGATAAAAA
64148 ATTAATTATTATTC
1 ATTAATTATTATTC
64162 ATTAATTATTATT
1 ATTAATTATTATT
64175 TTTTAAAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTAATTATTATTC
Found at i:65149 original size:24 final size:23
Alignment explanation
Indices: 65100--65171 Score: 71
Period size: 24 Copynumber: 3.2 Consensus size: 23
65090 TTAGGGTATA
**
65100 TTTTATTATATTTAATATTTTGT
1 TTTTATTATATTTAATATTTAAT
65123 TTTTAATT-TATTTAAATATTTAAT
1 TTTT-ATTATATTT-AATATTTAAT
65147 TTTT-TTAATATTT--TATTTAAT
1 TTTTATT-ATATTTAATATTTAAT
65168 TTTT
1 TTTT
65172 TTTTGCAGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
21 12 0.28
22 2 0.05
23 9 0.21
24 20 0.47
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.69
Consensus pattern (23 bp):
TTTTATTATATTTAATATTTAAT
Found at i:65149 original size:29 final size:31
Alignment explanation
Indices: 65107--65166 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 31
65097 ATATTTTATT
*
65107 ATATTTAATATTTTGTTT-TTAATTTATTTAA
1 ATATTTAATATTTT-TTTAATAATTTATTTAA
*
65138 ATATTT-A-ATTTTTTTAATATTTTATTTAA
1 ATATTTAATATTTTTTTAATAATTTATTTAA
65167 TTTTTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 3 0.12
29 16 0.62
30 1 0.04
31 6 0.23
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (31 bp):
ATATTTAATATTTTTTTAATAATTTATTTAA
Found at i:65158 original size:16 final size:17
Alignment explanation
Indices: 65124--65165 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
65114 ATATTTTGTT
65124 TTTAATTTATTTAAATA
1 TTTAATTTATTTAAATA
*
65141 TTTAATTT-TTTTAATA
1 TTTAATTTATTTAAATA
*
65157 TTTTATTTA
1 TTTAATTTA
65166 ATTTTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTAATTTATTTAAATA
Found at i:67539 original size:35 final size:32
Alignment explanation
Indices: 67504--67584 Score: 83
Period size: 35 Copynumber: 2.3 Consensus size: 32
67494 TTTGGTTAAT
67504 TTTGTT-TATTACCATTTAATATCAGTTATTGTAA
1 TTTGTTATATTACCATTTAATA-C--TTATTGTAA
67538 TTTGTTTATCATTTACCATTTAATACTTATTGTAA
1 TTTG-TTAT-A-TTACCATTTAATACTTATTGTAA
*
67573 GTTTGTTGTATT
1 -TTTGTTATATT
67585 TAAAATTATA
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
33 2 0.05
34 5 0.12
35 14 0.34
36 5 0.12
37 2 0.05
38 13 0.32
ACGTcount: A:0.26, C:0.09, G:0.10, T:0.56
Consensus pattern (32 bp):
TTTGTTATATTACCATTTAATACTTATTGTAA
Found at i:71019 original size:16 final size:16
Alignment explanation
Indices: 71000--71040 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
70990 TCAAATAATC
*
71000 ATAAT-AAACAATAAGT
1 ATAATAAAAAAAT-AGT
71016 ATAATAAAAAAATAGT
1 ATAATAAAAAAATAGT
71032 ATAATAAAA
1 ATAATAAAA
71041 TTACCTTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 17 0.74
17 6 0.26
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.24
Consensus pattern (16 bp):
ATAATAAAAAAATAGT
Found at i:72376 original size:17 final size:17
Alignment explanation
Indices: 72354--72389 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
72344 TCTTTCAATC
72354 TTCACACCAAGAGTTTT
1 TTCACACCAAGAGTTTT
72371 TTCACACCAAGAGTTTT
1 TTCACACCAAGAGTTTT
72388 TT
1 TT
72390 TGTGAATAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39
Consensus pattern (17 bp):
TTCACACCAAGAGTTTT
Done.