Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001772.1 Hibiscus syriacus cultivar Beakdansim tig00003573_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70703

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1162--1258
21
4.9
19
76
14
90
47
0
2
50
1.12
1162--1254
39
2.3
41
87
7
147
45
0
2
52
1.12
1183--1269
21
4.3
20
80
15
99
51
0
1
47
1.08
5852--5919
32
2.1
32
86
0
91
23
7
33
35
1.83
12283--12327
23
2.0
23
82
8
56
42
2
8
46
1.47
15663--15797
29
4.5
29
76
7
126
23
34
25
16
1.95
16423--16466
21
2.1
21
91
0
70
29
0
15
54
1.42
16443--16496
28
1.9
28
96
0
99
29
0
12
57
1.36
19570--20314
60
13.2
59
83
12
898
40
0
12
46
1.44
19625--20261
109
5.7
109
87
9
867
40
0
12
46
1.45
19852--19945
10
8.4
11
73
16
52
40
0
14
44
1.46
19852--19994
69
2.1
70
97
1
270
41
0
13
45
1.43
20261--20330
25
3.1
22
79
16
63
38
0
11
50
1.39
19929--20310
49
7.3
49
84
12
451
40
0
11
47
1.43
20282--20329
14
3.6
14
81
16
66
35
0
16
47
1.47
22640--22743
30
3.4
30
83
11
115
48
10
1
39
1.49
22923--22962
21
1.9
21
100
0
80
57
15
0
27
1.38
22990--23044
18
3.4
18
65
31
52
52
9
0
38
1.33
23064--23136
38
2.0
37
87
12
107
49
9
0
41
1.35
23640--23723
29
2.9
28
91
7
132
15
30
29
23
1.95
26665--26707
22
2.0
23
86
9
63
9
4
4
81
0.97
27066--27116
6
9.0
6
83
12
56
19
1
0
78
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27068--27115
5
8.8
5
84
11
51
18
2
0
79
0.84
27069--27118
16
3.5
15
77
22
63
18
2
0
80
0.82
27066--27116
23
2.3
22
93
3
84
19
1
0
78
0.85
27070--27117
17
2.8
18
81
9
57
18
2
0
79
0.84
27067--27125
23
2.5
23
78
13
66
18
1
1
77
0.93
27068--27134
13
5.6
12
77
18
68
19
2
1
76
1.00
28633--28687
3
18.3
3
92
0
92
63
0
0
36
0.95
30292--30406
52
2.2
52
77
13
121
49
0
0
48
1.13
30391--30466
26
2.8
28
75
15
61
50
0
1
48
1.09
30294--30463
29
5.8
29
70
21
99
48
0
1
49
1.13
30431--30466
2
18.0
2
100
0
72
50
0
0
50
1.00
35343--35378
12
2.8
14
80
20
51
52
0
0
47
1.00
35343--35406
23
2.7
23
85
4
74
51
1
0
46
1.10
35447--35516
29
2.3
29
81
13
79
52
2
0
44
1.15
35737--35782
15
3.1
15
76
17
60
30
17
8
43
1.79
36778--36820
16
2.6
16
77
3
50
58
0
2
39
1.11
38720--38775
20
2.8
20
88
2
85
39
25
19
16
1.91
39444--39480
20
1.9
19
89
10
58
48
10
21
18
1.78
40061--40103
21
2.0
21
100
0
86
37
0
13
48
1.43
47559--47606
23
2.1
23
92
0
78
35
10
18
35
1.85
54646--54695
22
2.3
22
96
0
91
38
28
10
24
1.87
54728--54773
18
2.6
18
83
10
60
50
8
10
30
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55143--56251
258
4.4
258
90
4
1749
40
20
12
27
1.87
57055--57230
32
5.1
33
68
19
108
43
32
7
16
1.75
57132--57280
32
4.8
30
76
10
79
46
24
8
21
1.78
57146--57227
32
2.5
33
86
4
130
47
29
9
13
1.75
58305--58352
22
2.2
22
92
0
78
20
25
20
33
1.97
60556--60586
5
6.2
5
100
0
62
0
38
0
61
0.96
68859--68909
2
25.0
2
96
4
93
49
1
0
49
1.12

Tables:   1

The End!