genome.fa.s1776.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001776.1 Hibiscus syriacus cultivar Beakdansim tig00003584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183134

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5071--5104	4	8.5	4	100	0	68	76	0	0	23	0.79
6267--6322	29	2.0	28	85	3	76	41	5	7	46	1.54
6342--6581	68	3.5	67	82	11	258	47	6	1	44	1.38
6342--6569	34	6.6	36	69	21	139	48	6	1	44	1.36
6546--6606	25	2.5	24	84	7	86	45	4	4	44	1.46
6699--6751	24	2.2	23	80	9	61	58	1	0	39	1.09
6709--6747	17	2.3	17	86	8	53	58	2	0	38	1.12
17404--17460	19	2.8	20	73	7	62	35	5	1	57	1.31
19425--19479	15	3.5	15	71	9	56	43	3	5	47	1.44
19520--19580	25	2.5	24	84	5	70	34	4	0	60	1.18
19523--19580	24	2.5	23	86	10	82	34	5	0	60	1.19
23462--23502	18	2.3	18	100	0	82	29	36	17	17	1.92
30762--30861	52	1.9	52	91	4	166	45	12	22	21	1.84
34788--34849	30	1.9	34	84	12	87	53	3	14	29	1.57
35919--36359	59	7.5	59	75	9	346	38	11	21	28	1.89
36169--36299	60	2.2	60	85	8	178	38	12	21	27	1.89
35918--36368	178	2.5	176	76	12	447	38	11	21	28	1.88
36436--36656	44	5.0	44	92	0	334	39	5	19	34	1.76
37506--37557	18	2.9	18	94	0	86	23	34	21	21	1.97
41899--41950	18	2.9	18	91	0	77	30	34	15	19	1.93
41963--42016	22	2.8	18	77	20	63	29	37	18	14	1.91
41972--42015	22	2.0	22	100	0	88	31	36	18	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41927--42058	66	2.0	66	95	0	237	33	33	13	19	1.91
43649--43739	45	2.0	45	100	0	182	21	10	30	36	1.88
44503--44533	2	15.5	2	100	0	62	48	0	0	51	1.00
54779--54826	21	2.3	21	92	0	78	62	10	12	14	1.54
74312--74382	31	2.3	31	92	0	115	54	7	14	23	1.64
76914--76952	19	2.0	20	85	5	53	41	5	0	53	1.23
82802--82864	28	2.2	29	81	10	69	23	3	15	57	1.53
83112--83641	281	1.9	287	84	7	724	49	6	11	32	1.66
83643--84022	2	192.0	2	64	15	85	42	5	7	45	1.54
83626--83681	20	3.0	20	80	12	57	50	5	1	42	1.35
83880--84022	22	6.3	22	73	15	94	43	4	6	46	1.48
87603--87683	22	3.6	22	96	1	144	24	29	27	18	1.98
87617--87679	10	5.5	13	65	27	52	26	26	26	19	1.99
92460--92539	22	3.6	22	91	5	126	25	28	26	20	1.99
93897--93941	21	2.1	21	87	0	63	15	24	28	31	1.96
95021--95207	99	1.9	97	97	2	356	33	12	28	25	1.93
106400--106519	34	3.5	34	91	8	199	64	0	0	35	0.94
107696--107734	14	2.8	13	85	11	51	25	0	15	58	1.37
107695--107742	13	3.5	13	83	8	60	29	0	12	58	1.35
108894--108934	16	2.6	16	96	0	73	36	0	29	34	1.58
109155--109192	15	2.5	15	87	8	51	71	0	0	28	0.87
112890--112945	22	2.5	22	77	16	62	64	7	3	25	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114209--114281	3	24.0	3	83	8	94	60	0	0	39	0.97
114699--115577	116	7.7	113	87	3	1226	29	19	13	37	1.90
114699--115577	229	3.9	227	92	1	1230	29	19	13	37	1.90
114699--115577	345	2.6	344	93	2	1488	29	19	13	37	1.90
115977--116031	22	2.5	22	87	0	83	36	14	14	34	1.87
118562--118785	114	2.0	114	90	0	358	30	20	15	33	1.93
120825--120862	7	5.6	7	84	6	51	0	18	0	81	0.69
120822--120862	21	2.0	20	90	4	64	0	19	0	80	0.71
124137--124190	14	3.8	14	85	2	63	51	9	14	24	1.71
126546--126601	22	2.5	22	77	16	62	64	7	3	25	1.35
127874--127937	3	21.0	3	81	9	76	59	0	0	40	0.97
127874--127941	18	4.0	17	85	11	86	60	0	0	39	0.97
127863--127941	28	2.9	28	85	10	101	58	0	0	41	0.98
129384--129492	54	2.0	55	89	1	166	28	17	21	33	1.96
141631--141657	7	3.9	7	100	0	54	44	0	29	25	1.54
143033--143082	21	2.4	21	96	0	91	32	6	14	48	1.67
144384--144449	13	5.3	13	70	14	50	43	0	6	50	1.27
144545--144615	24	3.2	24	67	22	73	39	7	8	45	1.62
144549--144628	42	1.9	42	94	0	142	42	8	7	41	1.64
144658--144785	2	59.0	2	67	20	53	40	7	5	46	1.54
144605--144679	33	2.3	34	88	6	118	41	10	6	41	1.66
144686--144785	7	14.6	7	71	21	52	41	8	5	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144625--144751	53	2.4	54	91	2	211	40	8	5	45	1.58
144660--144785	18	6.7	18	71	17	71	40	7	5	46	1.54
144626--144770	53	2.7	53	89	4	184	41	8	4	45	1.55
144713--144785	20	3.6	19	81	9	83	42	5	4	47	1.45
144829--145073	33	7.5	33	75	14	224	43	6	6	42	1.58
144853--145084	18	13.1	18	67	17	139	43	6	6	42	1.58
145144--145272	60	2.1	61	88	4	190	51	4	9	34	1.55
147976--148006	15	2.1	15	93	0	53	48	16	6	29	1.70
148328--148365	13	2.8	13	82	17	51	60	0	2	36	1.11
148344--148461	19	6.5	19	68	22	76	59	1	5	33	1.29
148345--148460	37	3.2	36	71	20	116	58	1	5	34	1.30
148394--148432	14	2.7	14	88	11	53	56	5	2	35	1.35
148329--148472	71	2.0	70	89	9	222	58	2	4	35	1.29
148465--148517	27	2.0	26	82	10	63	47	3	3	45	1.39
153949--153991	17	2.4	18	88	7	70	39	0	0	60	0.97
155419--155459	16	2.7	15	81	7	55	51	0	0	48	1.00
155407--155453	16	3.3	15	82	11	55	53	0	0	46	1.00
160440--160464	13	1.9	13	100	0	50	40	8	8	44	1.63
160903--160940	17	2.3	17	86	4	51	52	26	2	18	1.58
162825--162885	23	2.7	22	87	5	86	19	27	29	22	1.98
162814--162896	22	3.7	22	78	15	89	19	26	30	24	1.98
171596--171657	2	31.0	2	100	0	124	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172861--173009	74	2.0	73	81	12	171	30	2	12	55	1.47
173605--173653	19	2.6	18	81	9	62	20	4	2	73	1.10
173682--173718	16	2.5	15	84	16	51	35	2	0	62	1.10
176646--176671	6	4.3	6	100	0	52	0	0	15	84	0.62
176669--176705	5	7.4	5	100	0	74	18	18	0	62	1.34
176706--176747	22	2.0	21	85	4	57	21	0	0	78	0.75
178366--178513	75	2.0	75	81	9	176	29	2	10	58	1.42

Tables:   1

The End!