Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001777.1 Hibiscus syriacus cultivar Beakdansim tig00003585_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69699

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1266--1290
11
2.3
11
100
0
50
56
0
28
16
1.41
1670--1697
13
2.2
13
100
0
56
39
0
7
53
1.28
2979--3012
2
17.0
2
100
0
68
50
0
0
50
1.00
3973--4015
20
2.2
20
87
8
61
30
11
20
37
1.89
4246--4288
21
2.1
21
86
4
61
27
2
6
62
1.33
6566--6613
19
2.6
18
80
9
53
43
0
0
56
0.99
20608--20642
17
2.0
18
88
5
54
65
2
25
5
1.28
23430--23568
69
2.0
69
87
2
199
43
7
1
47
1.41
23431--23542
34
3.1
37
67
20
94
44
8
0
46
1.39
24973--25000
6
4.7
6
100
0
56
0
53
14
32
1.41
29374--29409
2
18.5
2
94
5
65
50
0
0
50
1.00
32729--32765
2
18.5
2
100
0
74
51
0
0
48
1.00
34851--34901
24
2.1
24
92
0
84
56
9
1
31
1.43
35059--35238
60
3.0
58
78
10
177
31
11
16
41
1.83
40406--40461
23
2.4
23
100
0
112
51
0
7
41
1.29
41294--41435
52
2.8
50
84
4
185
39
25
8
26
1.84
45386--45411
12
2.2
12
100
0
52
84
7
0
7
0.77
46203--46260
18
3.3
18
70
18
59
29
0
0
70
0.87
47294--47359
29
2.2
28
79
10
69
39
21
1
37
1.63
47739--47779
19
2.2
18
86
4
55
12
9
2
75
1.13
48008--48063
27
2.1
27
93
0
94
42
1
19
35
1.62
55665--55699
17
2.1
17
88
0
52
28
22
17
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57554--57605
6
8.7
6
97
0
95
36
0
13
50
1.42
66510--66551
21
2.0
21
85
0
57
50
0
0
50
1.00
66852--66889
20
1.9
20
89
10
60
65
5
2
26
1.27

Tables:   1

The End!