genome.fa.s1778.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001778.1 Hibiscus syriacus cultivar Beakdansim tig00003592_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88898

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363--464	3	35.3	3	88	7	149	35	2	0	61	1.11
363--464	20	5.1	20	86	11	138	35	2	0	61	1.11
363--464	23	4.3	23	86	11	152	35	2	0	61	1.11
358--475	17	6.4	19	80	12	115	37	3	0	59	1.14
1860--1905	13	3.5	13	82	11	58	41	0	0	58	0.98
3299--3384	35	2.5	33	78	14	93	54	10	8	26	1.62
3989--4040	18	2.9	18	94	0	86	26	15	25	32	1.95
5346--5564	111	2.0	108	92	4	368	45	10	8	36	1.69
7732--7775	22	2.0	22	100	0	88	27	31	18	22	1.97
10838--10880	20	2.2	20	87	8	61	30	32	13	23	1.93
11016--11066	21	2.4	21	87	6	68	29	23	9	37	1.87
11399--11452	20	2.6	20	88	5	72	24	29	24	22	1.99
11543--11602	22	2.8	21	85	9	86	31	23	15	30	1.95
14406--14555	74	2.0	75	88	7	223	44	4	10	40	1.60
17521--17594	36	2.1	36	89	5	114	39	12	12	36	1.80
18960--19260	55	5.5	55	88	4	414	27	18	19	34	1.95
23923--23981	31	1.9	31	92	0	100	40	6	10	42	1.65
24006--24048	22	2.0	22	100	0	86	51	13	0	34	1.42
24008--24056	22	2.2	22	88	3	71	55	14	0	30	1.40
23996--24841	54	15.6	54	71	18	444	52	12	0	34	1.40
24028--24912	32	32.4	30	67	29	405	52	12	0	34	1.40
24011--24817	80	10.0	80	81	10	519	52	13	0	34	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24062--24136	22	3.2	23	75	17	82	54	17	0	28	1.43
24142--24216	22	3.2	23	71	17	73	54	16	0	29	1.42
24220--24336	22	5.0	22	77	11	108	52	12	0	34	1.39
24321--24399	18	4.4	18	67	17	56	54	10	0	35	1.34
24348--24390	22	2.0	22	90	0	68	53	9	0	37	1.33
24393--24445	14	3.5	14	72	18	52	56	5	0	37	1.23
24434--24476	22	2.0	22	95	0	77	48	13	0	37	1.43
24436--24484	22	2.2	22	85	3	62	53	14	0	32	1.41
24518--24620	22	5.4	18	66	25	52	51	13	0	34	1.41
24490--24564	22	3.2	23	75	17	82	54	17	0	28	1.43
24568--24611	22	2.0	23	95	4	81	50	13	0	36	1.42
24570--24619	22	2.2	22	85	7	64	54	14	0	32	1.40
24654--24699	22	2.0	22	87	4	65	54	10	0	34	1.36
24703--24745	22	2.0	22	95	0	77	51	11	0	37	1.39
24705--24753	22	2.2	22	85	3	62	55	12	0	32	1.37
24748--24832	14	5.5	14	67	20	53	55	8	0	36	1.30
24762--24820	18	3.5	18	68	17	63	54	11	0	33	1.37
24852--24947	22	4.2	22	68	7	75	52	9	0	38	1.34
23996--24947	355	2.8	345	89	6	1280	52	12	0	34	1.40
24892--25009	15	7.5	15	81	13	139	51	2	0	45	1.14
24852--24994	67	2.1	67	87	5	198	51	6	0	42	1.27
27186--27267	37	2.2	37	97	0	155	37	25	14	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35888--35936	19	2.5	19	86	3	62	42	0	57	0	0.99
35888--35944	24	2.4	23	94	5	105	42	0	57	0	0.98
36822--36857	18	1.9	18	94	5	63	38	0	0	61	0.96
36792--36863	15	4.6	16	80	13	62	43	0	0	56	0.99
36822--36864	18	2.6	16	82	10	59	39	0	0	60	0.97
37566--37635	30	2.2	32	78	12	83	47	2	0	50	1.16
37817--37862	20	2.2	21	88	3	67	56	2	2	39	1.24
38709--38747	20	1.9	21	94	5	71	0	17	5	76	0.96
39265--39357	15	6.4	14	80	12	91	59	0	6	34	1.23
39265--39347	3	27.7	3	85	0	112	60	0	4	34	1.18
39603--40486	113	7.8	113	90	0	1331	29	19	13	38	1.89
39603--40486	339	2.6	339	93	1	1522	29	19	13	38	1.89
40790--41097	84	3.7	84	98	0	589	36	22	15	26	1.93
41932--41966	11	3.1	11	88	8	52	0	20	0	80	0.72
52580--52621	18	2.4	17	84	11	50	69	4	0	26	1.08
53065--53134	30	2.2	32	78	12	83	47	2	0	50	1.16
54195--54235	20	2.0	21	90	4	66	0	17	7	75	1.02
54753--54842	15	6.4	14	78	15	89	58	0	6	34	1.24
54753--54832	3	26.7	3	84	0	106	60	0	5	35	1.19
57054--57115	31	2.0	31	96	0	115	29	27	17	25	1.98
57637--57690	14	3.9	14	80	2	56	70	5	7	16	1.30
57656--57698	19	2.3	18	84	8	50	79	2	6	11	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57714--57760	22	2.1	22	80	11	60	70	0	4	25	1.05
57778--57897	37	3.4	36	78	14	133	45	4	1	48	1.31
57825--57924	33	3.3	31	79	10	116	47	5	1	47	1.31
57893--57918	12	2.2	12	100	0	52	50	7	0	42	1.31
57826--57926	30	3.3	30	79	14	107	45	4	0	48	1.30
57896--58115	37	5.9	37	86	6	270	44	5	3	46	1.44
57890--58115	72	3.1	70	84	7	272	44	5	3	46	1.43
57890--58152	109	2.4	111	84	6	311	43	6	4	45	1.50
58528--58581	22	2.3	24	84	12	69	42	1	0	55	1.10
59771--59853	32	2.6	32	84	0	103	37	18	7	37	1.78
59768--59889	64	1.9	63	83	1	154	33	18	9	39	1.82
61658--61690	16	2.0	17	88	5	50	72	0	21	6	1.05
65366--65391	12	2.2	12	100	0	52	34	23	7	34	1.83
65515--65572	27	2.1	27	100	0	116	34	17	13	34	1.89
71155--71246	23	4.0	23	81	4	96	33	22	25	18	1.97
72413--72525	60	1.9	60	92	0	190	23	21	23	31	1.98
77252--77284	18	1.9	17	88	11	50	21	21	9	48	1.77
77620--77712	30	3.1	30	75	14	93	35	19	16	29	1.93
77620--77711	31	3.0	30	78	7	89	35	18	16	29	1.93
83752--83843	41	2.2	41	86	0	121	40	17	8	33	1.80

Tables:   1

The End!