genome.fa.s178.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000178.1 Hibiscus syriacus cultivar Beakdansim tig00000313_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178192

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2473--2537	21	3.1	21	80	6	69	40	15	29	15	1.88
2573--2633	32	1.9	32	86	6	88	27	0	49	22	1.50
4550--5676	194	5.9	195	91	6	1808	37	15	16	30	1.90
7118--7197	6	13.3	6	78	0	61	37	7	35	20	1.81
7121--7167	24	2.0	24	95	0	85	36	10	36	17	1.84
7157--7201	3	15.0	3	85	0	63	37	2	33	26	1.69
7121--7197	12	6.4	12	84	0	73	36	7	35	20	1.82
8645--9161	182	2.9	182	92	1	844	36	13	16	33	1.88
11603--11667	25	2.6	25	80	0	85	35	9	13	41	1.77
12010--12072	23	2.7	23	90	0	90	36	6	19	38	1.77
12010--12082	23	3.2	23	86	3	85	35	5	19	39	1.75
12274--12300	3	9.0	3	100	0	54	66	33	0	0	0.92
15745--15795	25	2.0	25	92	0	84	33	7	19	39	1.81
16183--16219	18	2.1	18	89	0	56	32	5	10	51	1.60
16175--16221	24	2.0	24	86	0	67	34	4	14	46	1.64
16477--16563	39	2.2	39	95	0	156	48	20	13	17	1.81
16964--17036	23	3.2	23	84	0	92	35	4	21	38	1.73
17079--17719	333	1.9	334	97	0	1205	42	7	11	38	1.69
17727--17790	23	2.8	23	90	0	101	35	4	21	37	1.75
16671--18478	759	2.4	764	97	1	3408	41	7	11	38	1.71
17840--18505	332	2.0	329	95	2	1014	42	7	10	38	1.69
28410--28440	16	1.9	16	93	0	53	41	19	19	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28622--29014	217	1.8	217	80	4	479	34	15	22	27	1.94
30261--30357	48	2.0	48	100	0	194	30	13	18	37	1.89
32914--32972	26	2.3	26	90	0	91	22	49	16	11	1.78
33157--33403	117	2.1	117	94	1	433	51	6	11	30	1.62
41265--41294	2	15.0	2	100	0	60	50	0	0	50	1.00
44529--44562	2	17.0	2	100	0	68	50	0	0	50	1.00
45640--45678	20	2.0	20	90	10	62	35	0	0	64	0.94
46460--46512	21	2.5	21	90	0	88	22	28	18	30	1.98
46502--46597	20	4.8	20	87	7	92	36	22	17	22	1.95
49206--49240	18	1.9	18	88	0	52	28	17	0	54	1.43
50538--50566	13	2.2	13	100	0	58	20	24	37	17	1.93
50545--50632	18	5.5	17	72	25	84	13	21	47	17	1.81
50537--50632	31	3.1	31	96	0	174	14	21	46	16	1.83
50564--50628	13	4.6	13	82	17	85	12	23	47	16	1.80
51748--51794	20	2.3	20	85	0	58	38	23	17	21	1.93
51765--51805	20	2.0	20	90	0	64	29	21	17	31	1.96
51807--51859	20	2.7	20	90	0	79	16	18	26	37	1.93
53728--53897	74	2.2	78	88	6	249	41	21	18	18	1.90
53728--53897	20	8.8	20	84	7	235	41	21	18	18	1.90
54045--54131	20	4.3	20	92	0	138	21	19	20	37	1.94
54608--54649	21	2.2	19	87	12	59	21	35	19	23	1.96
54655--54713	21	2.8	21	74	5	57	22	40	18	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56236--56312	40	1.9	40	83	0	100	16	22	15	45	1.85
56296--56363	20	3.4	20	87	4	102	20	20	22	36	1.95
58595--58633	3	13.0	3	88	0	60	0	28	0	71	0.86
58595--58633	12	3.2	12	96	0	69	0	28	0	71	0.86
58809--58862	24	2.2	24	93	0	90	40	20	18	20	1.91
58809--58876	24	2.8	24	84	0	64	38	20	17	23	1.93
59723--59989	20	13.3	20	80	8	310	23	19	19	38	1.93
59723--59989	40	6.7	40	92	1	410	23	19	19	38	1.93
59986--60031	21	2.2	21	88	0	65	36	17	28	17	1.92
60915--61129	32	6.5	32	73	15	170	40	33	8	16	1.80
61060--61126	28	2.4	28	90	2	109	44	31	8	14	1.76
60958--61159	107	1.9	106	84	10	275	39	31	8	20	1.83
63831--63859	15	2.0	15	93	6	51	55	13	6	24	1.63
63876--64014	47	3.2	47	62	26	122	36	17	17	27	1.93
65039--65079	15	2.9	15	86	13	52	53	24	2	19	1.57
65918--66002	40	2.1	40	97	0	161	32	10	28	28	1.90
66474--66508	15	2.3	15	90	0	52	31	8	25	34	1.86
66482--66554	15	4.9	15	80	6	58	28	4	26	41	1.74
66833--66857	13	1.9	13	100	0	50	40	4	8	48	1.51
67431--67906	237	2.0	236	92	1	801	27	21	15	35	1.94
68853--68921	36	1.9	35	91	2	111	47	14	5	31	1.68
71086--71116	15	2.1	15	100	0	62	54	12	19	12	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74828--74884	24	2.4	24	90	0	96	43	12	24	19	1.85
74987--75081	37	2.5	37	84	5	118	12	8	36	42	1.73
75806--75830	12	2.1	12	100	0	50	24	40	16	20	1.91
90285--90327	15	2.9	15	85	0	68	25	2	46	25	1.65
106276--106349	24	3.1	23	71	7	67	31	8	24	36	1.84
124334--124431	39	2.5	39	88	0	151	28	10	12	48	1.73
134662--134687	2	13.0	2	100	0	52	50	0	0	50	1.00
147687--149016	661	2.0	661	90	2	2084	34	16	11	37	1.85
148954--148996	20	2.3	19	88	8	61	25	27	9	37	1.87
149191--149230	19	2.1	19	85	4	53	12	0	40	47	1.41
166569--166602	16	2.1	16	94	0	59	32	26	8	32	1.87
168775--168844	21	3.4	21	74	7	81	18	20	27	34	1.96
168781--168873	40	2.3	42	92	3	154	19	18	25	36	1.94
168967--169003	6	6.2	6	93	0	65	35	51	13	0	1.41
169625--170085	21	22.4	21	66	19	197	37	22	18	21	1.94
169621--170064	42	10.8	42	93	2	746	36	23	18	21	1.95
169621--170064	122	3.6	126	92	3	746	36	23	18	21	1.95
174763--174817	28	1.9	29	92	3	94	45	0	0	54	0.99
175323--175373	16	3.2	16	78	13	52	35	7	0	56	1.28

Tables:   1

The End!