genome.fa.s1780.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001780.1 Hibiscus syriacus cultivar Beakdansim tig00003597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105030

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3401--3444	2	22.0	2	95	0	79	50	0	2	47	1.13
4942--5006	2	32.5	2	87	0	76	0	58	0	41	0.98
4943--5006	10	6.6	10	87	7	87	0	59	0	40	0.97
5609--5651	21	2.2	19	87	8	59	62	4	4	27	1.35
5905--5941	15	2.3	16	86	13	58	37	16	0	45	1.47
5910--5940	15	2.1	15	100	0	62	35	19	0	45	1.51
7769--7833	18	3.4	18	72	12	67	49	16	4	29	1.66
7749--7831	39	2.1	39	100	0	166	50	18	4	26	1.66
7872--7918	19	2.5	19	86	6	69	21	27	0	51	1.48
7883--7968	13	6.4	13	67	12	57	23	23	2	51	1.60
7876--7968	28	3.4	28	89	4	138	22	24	2	50	1.60
7999--8053	18	3.0	18	84	5	65	36	14	3	45	1.63
7999--8065	19	3.6	19	82	6	66	38	14	4	41	1.67
9607--9636	14	2.1	14	93	0	51	23	16	6	53	1.66
9720--9786	16	3.9	16	71	17	53	28	5	0	65	1.16
9758--9795	13	3.1	13	88	7	53	26	0	0	73	0.83
13795--13819	11	2.3	11	100	0	50	92	0	8	0	0.40
13795--13903	15	7.2	14	73	14	76	77	1	16	4	1.03
15857--16887	53	19.1	55	81	7	588	31	9	17	41	1.82
15925--16388	55	8.4	54	75	8	290	32	9	14	43	1.78
15859--16384	110	4.8	110	78	9	403	32	10	14	42	1.79
16241--17025	53	14.8	53	85	2	961	29	9	20	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16361--17025	264	2.5	265	89	1	1005	29	9	20	40	1.84
26651--26698	21	2.3	21	100	0	96	29	20	18	31	1.97
35657--35826	90	1.9	88	92	2	286	38	11	5	44	1.64
36882--36908	14	1.9	14	100	0	54	14	37	18	29	1.91
42497--42666	90	1.9	88	93	2	295	37	11	7	44	1.67
48230--48260	16	1.9	16	93	0	53	6	9	32	51	1.60
49133--49237	53	2.0	53	90	0	165	37	17	11	34	1.85
57668--57698	16	1.9	16	93	0	53	25	19	12	41	1.87
57715--57751	19	1.9	19	100	0	74	35	0	21	43	1.53
57974--58034	24	2.5	24	81	7	70	52	1	4	40	1.33
59113--59174	22	2.7	23	80	5	63	69	0	6	24	1.12
59893--59986	42	2.2	42	92	0	152	53	12	5	28	1.61
61186--61306	40	2.9	43	78	12	142	52	3	29	14	1.58
61187--61331	43	3.4	43	80	7	145	49	4	31	14	1.64
65056--65115	26	2.3	26	91	0	93	36	28	13	21	1.91
65989--66055	29	2.3	30	82	7	75	32	19	8	38	1.83
80244--80303	30	1.9	32	83	6	79	61	1	6	30	1.31
82351--82410	3	20.0	3	96	0	111	65	0	0	35	0.93
85344--85440	23	4.4	22	81	10	108	28	15	25	29	1.96
86064--86110	23	2.0	24	87	4	69	31	25	23	19	1.98
86524--86553	13	2.3	13	94	0	51	16	13	10	60	1.59
87956--88015	26	2.3	26	91	0	93	36	30	11	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91356--91428	31	2.4	31	95	0	128	49	20	13	16	1.79
92051--92081	15	2.1	15	93	0	53	35	16	9	38	1.81
92500--92573	23	3.3	22	74	14	80	27	24	21	27	1.99
93036--93069	13	2.6	13	90	0	50	35	20	5	38	1.77
97402--97456	20	2.7	20	78	18	60	29	16	27	27	1.97
98584--98687	40	2.6	40	78	4	129	45	7	7	39	1.62
98584--98745	79	2.0	80	81	1	191	41	11	8	38	1.70
98850--99255	115	3.5	113	81	9	430	43	13	6	36	1.70
98946--99255	173	1.8	171	87	4	471	42	13	6	36	1.71
98850--99255	57	7.1	58	83	5	445	43	13	6	36	1.70
99423--99545	42	2.8	44	76	10	119	37	13	7	42	1.71
100097--100206	42	2.6	42	95	0	193	17	16	18	48	1.82
100387--100499	52	2.2	48	83	10	129	49	0	0	48	1.13
100420--100570	26	5.7	28	68	26	82	47	0	1	49	1.17
100428--100520	48	1.9	48	87	8	136	50	1	1	47	1.15
100892--101001	20	5.5	20	97	0	211	35	15	9	40	1.79
100984--101055	30	2.4	30	90	2	119	31	16	6	44	1.74
100984--101055	15	4.9	15	77	3	83	31	16	6	44	1.74
102985--103042	23	2.5	22	74	15	55	46	1	0	51	1.11
104131--104200	2	35.0	2	100	0	140	50	0	0	50	1.00
104269--104307	20	2.0	20	84	0	51	33	20	20	25	1.97

Tables:   1

The End!