genome.fa.s1781.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001781.1 Hibiscus syriacus cultivar Beakdansim tig00003598_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123647

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1472--1667	57	3.4	58	89	6	285	37	10	20	31	1.86
1923--1956	17	1.9	18	88	5	52	38	8	17	35	1.81
10652--10711	24	2.3	26	75	11	61	38	1	20	40	1.62
13064--13266	59	3.5	59	97	0	372	37	10	21	30	1.87
13064--13336	118	2.3	118	81	7	322	38	10	19	31	1.85
13533--13566	17	1.9	18	88	5	52	38	8	17	35	1.81
20817--20841	2	12.5	2	100	0	50	52	0	0	48	1.00
22935--23090	21	7.6	21	68	4	120	21	19	23	35	1.96
22931--23113	41	4.5	41	95	0	330	20	20	22	36	1.95
22959--23110	20	7.4	20	68	4	115	18	21	23	37	1.94
23102--23195	22	4.4	22	81	8	131	18	19	25	37	1.94
22959--23173	41	5.2	41	90	3	165	18	20	23	37	1.94
22931--23154	82	2.7	81	88	4	308	20	20	22	37	1.95
23921--23995	22	3.5	22	71	10	84	37	26	18	17	1.93
23924--24015	41	2.2	41	90	5	141	39	25	20	15	1.91
23987--24042	20	2.8	20	97	0	103	42	21	23	12	1.86
25497--25525	13	2.2	13	100	0	58	13	13	58	13	1.63
26694--26725	15	2.1	16	94	5	57	50	18	25	6	1.70
29985--30013	13	2.2	13	100	0	58	13	13	58	13	1.63
33146--33171	2	13.0	2	100	0	52	50	0	0	50	1.00
36094--36177	33	2.5	33	88	0	123	29	25	22	22	1.99
36526--36993	60	7.9	59	77	6	412	31	29	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36835--36934	33	3.2	33	67	23	90	29	34	17	20	1.95
36846--36948	27	3.6	27	67	23	75	30	31	19	19	1.96
37311--37381	33	2.2	33	85	10	92	28	28	21	22	1.99
40515--40568	24	2.3	23	78	15	56	48	1	3	46	1.30
44651--44684	17	2.0	17	94	0	59	47	8	11	32	1.71
45780--45870	20	4.9	20	68	20	72	34	5	15	45	1.69
45779--45926	53	2.8	52	94	3	262	33	5	12	47	1.65
45885--45924	20	2.0	20	90	0	62	40	5	10	45	1.60
52574--52612	20	2.0	20	94	0	69	35	5	17	41	1.72
52573--52720	53	2.8	52	93	3	262	32	5	13	48	1.65
52626--52664	20	2.0	20	84	0	51	33	5	15	46	1.68
52679--52718	20	2.0	20	95	0	71	37	5	12	45	1.64
57302--57370	31	2.2	31	89	0	102	26	14	13	46	1.81
61339--61496	21	7.8	20	72	7	86	38	25	17	18	1.92
61463--61672	20	10.5	20	80	6	201	37	25	17	20	1.94
62569--62593	12	2.1	12	100	0	50	72	0	28	0	0.86
64918--65014	19	5.4	19	82	15	134	14	22	17	45	1.85
64899--65014	51	2.2	52	96	3	216	13	24	18	43	1.86
65073--65234	33	4.7	33	75	16	159	45	17	22	14	1.85
65073--65240	19	9.6	19	76	18	177	44	17	23	14	1.86
65073--65240	52	3.2	52	97	0	309	44	17	23	14	1.86
65247--65346	19	5.5	19	84	12	147	15	23	17	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65230--65346	53	2.2	53	95	1	209	14	24	17	43	1.86
65452--65488	14	2.6	14	91	0	65	45	21	0	32	1.52
65554--65587	11	3.0	11	86	4	50	64	17	0	17	1.29
67456--67512	14	3.7	14	77	20	60	45	22	21	10	1.82
67437--67529	33	2.8	33	95	0	168	47	21	20	10	1.80
67400--67534	19	7.6	19	76	16	128	45	23	19	11	1.82
67530--67658	19	7.3	19	75	17	125	8	17	28	45	1.77
67530--67621	33	2.8	33	93	3	150	7	18	28	45	1.76
67702--68078	92	4.1	93	96	2	708	46	18	12	22	1.83
69779--69868	14	5.7	14	74	23	81	42	23	25	8	1.83
69771--69885	33	3.5	33	95	0	212	45	20	24	9	1.81
69778--69890	19	6.8	18	72	23	88	43	22	24	9	1.83
69902--69955	14	3.5	14	73	22	54	7	25	24	42	1.80
69886--69966	33	2.5	33	93	0	135	7	23	22	46	1.76
69942--70019	41	1.9	41	94	0	138	11	26	16	44	1.82
69943--70018	21	3.7	21	82	3	100	10	26	17	46	1.80
70098--70168	33	2.2	33	86	0	97	46	18	23	11	1.81
70348--70401	22	2.5	21	78	3	63	20	16	38	24	1.92
70546--70739	20	9.6	20	82	5	221	19	19	25	35	1.95
70546--70739	60	3.2	60	83	0	253	19	19	25	35	1.95
70687--70781	20	4.7	20	79	5	102	16	17	24	41	1.90
70726--70849	21	6.0	21	72	5	108	25	16	23	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70712--70823	41	2.7	41	91	6	174	23	16	21	38	1.93
87838--87919	29	2.8	28	87	7	110	41	7	9	41	1.66
87831--87934	28	3.6	28	84	5	127	40	9	10	39	1.73
92538--92572	17	2.1	16	89	5	52	45	0	0	54	0.99
97813--97863	17	2.7	19	88	8	70	47	3	3	45	1.40
97979--98224	100	2.5	98	85	5	323	38	12	12	36	1.81
98754--98810	30	1.9	30	92	0	96	49	8	8	33	1.65
102234--102288	23	2.4	23	84	0	65	34	23	21	20	1.97
102886--102955	12	5.5	12	70	12	59	41	18	5	34	1.74
102871--102977	26	4.1	26	97	0	205	39	18	6	35	1.77
106320--106527	105	2.0	105	98	0	398	40	18	9	31	1.82
115723--116097	185	2.0	183	91	2	599	42	3	8	46	1.51
116722--116763	14	2.9	14	86	13	59	71	0	7	21	1.09
117011--117062	21	2.5	21	81	3	61	38	19	25	17	1.93
117051--117185	20	6.7	20	77	7	103	34	23	17	25	1.96
117048--117185	61	2.3	61	83	0	177	35	23	16	24	1.95
117353--117396	22	2.0	22	95	0	79	20	45	15	18	1.85
118883--118957	33	2.3	33	92	0	123	46	17	22	13	1.82
118896--119022	52	2.5	51	84	8	161	48	20	18	12	1.81
118896--119023	19	7.3	19	75	19	102	47	21	18	12	1.81
118980--119023	18	2.4	18	96	3	79	45	27	15	11	1.81
119023--119149	33	3.8	33	94	0	218	12	23	19	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119368--119418	20	2.5	20	100	0	102	19	31	19	29	1.97
120158--120211	24	2.2	24	90	0	81	22	16	20	40	1.91
120386--120410	12	2.1	12	100	0	50	72	0	28	0	0.86
122658--122810	19	8.7	19	68	23	68	42	19	22	15	1.89
122680--122806	33	3.8	33	91	3	211	43	19	22	14	1.87
122681--122812	65	2.0	66	97	1	248	42	19	22	15	1.88
122821--122877	14	3.7	14	72	20	51	8	22	22	45	1.80
122806--122895	33	2.7	33	92	0	144	13	21	21	44	1.85
122835--122895	19	3.5	19	76	21	78	11	21	21	45	1.82

Tables:   1

The End!