genome.fa.s1782.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001782.1 Hibiscus syriacus cultivar Beakdansim tig00003599_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47336

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2374--2422	22	2.3	20	83	12	71	34	14	18	32	1.91
2379--2427	22	2.2	22	96	0	89	30	18	18	32	1.95
3580--3605	2	13.0	2	100	0	52	50	0	0	50	1.00
15065--15273	37	5.8	37	77	13	197	78	0	11	10	0.97
15066--15264	46	4.4	45	73	18	159	78	0	11	10	0.97
15052--15274	9	24.4	9	70	17	97	77	0	12	9	0.99
15052--15273	83	2.7	77	81	16	227	77	0	12	9	0.98
15066--15241	28	6.5	25	78	14	117	78	0	11	9	0.95
16547--16622	37	2.1	37	90	5	118	39	17	21	22	1.92
16633--16999	55	6.7	54	86	5	470	28	19	23	28	1.98
16633--16999	110	3.3	110	90	2	533	28	19	23	28	1.98
16633--16999	165	2.2	165	88	1	531	28	19	23	28	1.98
19326--19363	15	2.5	15	95	0	67	23	15	21	39	1.92
20760--20894	40	3.2	43	80	12	145	31	20	23	23	1.98
24205--24686	82	5.9	84	78	8	420	34	18	18	27	1.95
24205--24647	83	5.4	84	78	10	398	35	18	18	26	1.95
24205--24661	41	11.1	39	73	15	275	35	18	19	27	1.95
24259--24686	40	10.4	42	79	9	402	35	18	18	26	1.95
24301--24678	205	1.8	206	84	6	516	35	19	19	26	1.95
24259--24686	124	3.5	121	78	11	379	35	18	18	26	1.95
24508--24701	41	4.8	40	80	9	135	30	19	19	29	1.97
25022--25056	17	2.1	17	88	0	52	45	5	0	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25034--25076	21	2.0	22	90	4	70	41	2	2	53	1.26
28829--28882	22	2.5	22	87	0	81	50	3	1	44	1.30
28828--28889	22	2.8	22	82	7	65	46	3	3	46	1.35
30784--30816	16	2.0	16	94	5	57	54	0	0	45	0.99
32626--33194	156	3.6	155	84	5	664	28	17	7	46	1.75
38398--38783	199	1.9	198	80	5	449	35	10	19	34	1.87
40454--40535	24	3.3	23	78	17	83	51	4	18	25	1.66
40455--40535	27	3.1	27	84	7	105	51	4	18	24	1.65
40826--40894	36	1.9	36	82	5	86	17	57	11	13	1.64
41598--41650	27	2.0	27	84	0	70	33	16	18	30	1.94
43286--43381	4	22.8	4	71	10	57	64	3	4	28	1.27
43346--43381	13	2.9	12	84	8	54	72	2	0	25	0.98
43328--43376	18	2.8	18	93	3	82	67	4	2	26	1.19
43290--43383	18	5.2	17	73	12	80	63	3	4	28	1.28
43904--43978	29	2.5	29	80	8	80	32	5	1	61	1.27
45995--46103	41	2.7	41	90	5	168	17	4	9	68	1.33
45995--46062	21	3.3	21	66	13	61	17	4	7	70	1.27

Tables:   1

The End!