Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001783.1 Hibiscus syriacus cultivar Beakdansim tig00003602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105642

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2173--2215
20
2.2
20
91
0
68
13
23
13
48
1.79
2319--2387
35
2.0
34
88
5
104
36
13
8
42
1.75
19895--19963
22
3.1
22
95
0
120
17
40
24
17
1.90
26128--26179
21
2.4
22
87
9
79
71
5
0
23
1.07
27702--27775
30
2.4
30
88
2
112
56
8
5
29
1.51
39233--39320
33
2.7
33
81
0
104
48
20
10
20
1.78
42165--42223
28
2.1
28
90
0
91
52
11
3
32
1.54
45957--45999
22
2.0
22
100
0
86
65
0
0
34
0.93
47858--47887
12
2.5
12
94
0
51
30
33
3
33
1.74
49465--49534
21
3.5
20
72
18
65
58
1
1
38
1.16
50008--50051
19
2.6
16
76
16
52
63
0
2
34
1.07
50021--50086
22
3.0
22
84
2
80
62
4
0
33
1.16
50824--50901
29
2.7
30
80
6
79
42
32
3
21
1.71
53903--53943
22
1.9
22
95
5
75
70
0
0
29
0.87
55292--55326
17
2.1
17
89
10
54
40
0
5
54
1.24
55880--55985
42
2.5
42
83
3
124
23
33
19
22
1.97
55967--56033
21
3.2
21
82
6
73
23
32
23
19
1.97
56089--56117
14
2.1
14
100
0
58
27
20
6
44
1.77
56947--56993
20
2.4
21
82
13
64
44
23
0
31
1.54
56995--57310
139
2.3
139
89
0
463
35
22
18
22
1.95
64011--64069
31
1.9
31
85
0
82
25
15
11
47
1.79
66359--66799
123
3.6
121
81
6
451
27
19
19
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66360--66799
42
10.7
40
73
8
273
27
19
19
33
1.96
66770--66856
28
3.1
28
93
1
138
21
21
21
34
1.97
69910--70022
43
2.6
43
90
0
172
38
17
19
23
1.93
73094--73118
2
12.5
2
100
0
50
48
0
0
52
1.00
74768--74815
24
2.1
22
84
7
60
41
4
2
52
1.32
76135--76170
19
1.9
18
88
5
54
58
2
0
38
1.13
79286--79326
17
2.5
17
80
11
50
39
0
17
43
1.49
79378--79422
14
3.2
14
74
0
54
66
13
4
15
1.39
84339--84384
2
23.0
2
100
0
92
50
0
0
50
1.00
91798--91893
48
2.0
48
89
0
147
31
20
7
40
1.80
92746--92785
2
20.5
2
94
5
73
52
0
0
47
1.00
93198--93273
36
2.1
36
85
7
100
47
1
3
47
1.29
100921--100967
2
23.5
2
95
0
85
46
0
2
51
1.13

Tables:   1

The End!