Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001786.1 Hibiscus syriacus cultivar Beakdansim tig00003605_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49924

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1654--1718
29
2.2
29
82
15
73
46
0
18
35
1.50
2860--2904
20
2.3
20
88
3
65
37
2
24
35
1.68
4397--4455
30
2.0
30
100
0
118
28
16
27
27
1.97
4915--4947
16
2.1
16
88
5
50
39
0
15
45
1.46
7685--7710
6
4.3
6
100
0
52
34
15
0
50
1.45
8262--8415
76
2.0
76
89
0
236
25
14
18
41
1.88
11778--11930
76
2.0
77
92
1
254
30
21
9
39
1.84
14401--14430
12
2.5
12
88
0
51
40
60
0
0
0.97
14450--14492
2
21.5
2
90
0
68
2
0
51
46
1.13
14555--14585
14
2.2
14
100
0
62
29
0
19
51
1.47
17820--17890
21
3.4
21
82
7
90
23
42
26
7
1.80
23355--23410
21
2.7
21
91
0
85
32
17
16
33
1.92
23485--23530
20
2.3
20
84
0
56
26
17
17
39
1.91
23494--23534
20
2.0
20
90
0
64
29
17
17
36
1.92
24295--24379
8
10.6
8
85
7
75
80
0
18
1
0.79
24295--24379
12
7.2
12
88
6
95
80
0
18
1
0.79
24331--24377
4
11.8
4
100
0
94
76
0
23
0
0.78
25707--25835
52
2.5
52
94
0
231
29
26
15
28
1.96
27957--28052
30
3.2
30
87
0
147
14
15
39
30
1.87
39765--39839
15
5.2
15
72
15
68
54
2
1
41
1.23
39764--39850
42
2.1
41
95
4
158
52
4
2
40
1.34
43990--44186
95
2.1
95
99
0
385
21
16
10
51
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45517--46036
45
11.6
45
87
1
697
25
24
11
39
1.89
47328--47355
9
3.1
9
100
0
56
46
10
0
42
1.38
48668--48900
84
2.8
84
81
5
283
34
19
18
27
1.95

Tables:   1

The End!