genome.fa.s1787.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001787.1 Hibiscus syriacus cultivar Beakdansim tig00003606_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145145

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9141--9204	21	3.0	21	81	4	65	25	35	23	15	1.94
11453--11478	12	2.2	12	100	0	52	30	0	23	46	1.53
13125--13170	2	23.5	2	86	4	67	47	2	2	47	1.26
22570--22624	20	2.8	19	79	20	60	45	5	9	40	1.59
23943--24009	20	3.4	18	75	18	55	31	17	13	37	1.89
28839--28884	20	2.3	20	88	3	67	36	28	0	34	1.58
30799--30857	21	2.7	21	94	5	100	38	16	11	32	1.86
33378--33463	35	2.5	34	86	1	109	19	20	18	40	1.91
33380--33463	34	2.4	35	86	2	107	20	21	17	40	1.91
34894--34939	20	2.3	20	88	3	67	36	30	0	32	1.58
36061--36118	12	4.8	12	71	12	55	44	5	8	41	1.57
35987--36271	37	7.7	37	85	5	355	43	4	10	41	1.60
36404--36446	13	3.4	13	78	15	54	11	2	0	86	0.67
36385--36446	31	1.9	32	87	12	92	11	3	4	80	0.98
38215--38253	14	2.8	13	88	11	51	20	5	5	69	1.28
42798--42881	20	4.1	20	72	13	62	16	26	35	21	1.94
50761--51037	46	6.0	46	88	1	412	22	24	10	43	1.84
70920--70950	15	2.1	15	100	0	62	25	29	19	25	1.99
80276--80308	16	1.9	18	88	11	52	42	3	18	36	1.66
80576--80973	198	2.0	199	95	4	716	27	12	29	30	1.93
80947--81008	22	2.9	22	79	9	74	14	24	37	24	1.93
90710--90744	17	2.1	17	94	0	61	37	22	28	11	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95056--95089	17	2.0	17	100	0	68	47	5	5	41	1.52
100073--100212	62	2.3	62	83	5	176	31	10	11	46	1.74
101582--101618	18	2.1	18	94	0	65	35	27	2	35	1.71
105228--105277	25	2.0	25	96	0	91	42	22	8	28	1.81
109737--109785	25	2.0	25	92	8	82	38	24	8	28	1.84
113142--113212	36	1.9	38	83	11	94	42	2	0	54	1.14
113644--113704	26	2.3	26	82	2	68	47	0	0	52	1.00
114492--114742	127	2.0	127	90	3	398	35	21	11	31	1.90
120142--120182	3	13.7	3	94	0	73	31	0	2	65	1.05
121014--121050	16	2.3	16	95	0	65	29	13	21	35	1.92
124272--124344	22	3.4	22	77	5	69	73	9	13	2	1.18
124305--124390	19	4.5	19	76	9	79	75	3	17	3	1.08
124306--124396	28	3.2	28	79	11	96	75	3	17	3	1.07
124298--124394	19	4.9	19	73	22	69	75	4	17	3	1.09
126412--126594	43	4.3	43	82	0	222	26	12	31	29	1.92
126412--126594	86	2.1	86	86	2	260	26	12	31	29	1.92
126605--126730	42	3.0	42	83	5	157	26	13	30	28	1.94
126797--126840	22	2.0	22	100	0	88	22	18	27	31	1.97
126820--126907	42	2.1	42	82	0	104	28	18	18	35	1.94
126884--127193	90	3.5	90	90	4	493	26	18	21	32	1.97
127151--127264	42	2.7	41	76	9	115	27	25	19	28	1.99
127749--128004	43	6.0	43	88	1	336	25	12	32	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128064--128111	22	2.2	22	100	0	96	25	16	27	31	1.97
128087--128174	42	2.1	42	86	0	122	25	18	21	35	1.95
128151--128461	90	3.5	90	91	1	491	27	18	20	32	1.96
128421--128532	42	2.7	42	75	9	122	28	25	17	27	1.98
129017--129265	43	5.8	43	87	1	331	24	13	32	29	1.93
129332--129379	22	2.2	22	100	0	96	25	16	27	31	1.97
129355--129442	42	2.1	42	84	0	113	26	18	20	35	1.95
129419--129729	90	3.5	90	94	1	536	27	18	22	31	1.97
129687--129798	42	2.7	41	75	9	111	27	25	19	26	1.99
130300--130368	21	3.2	21	64	18	52	23	11	33	31	1.90
130286--130533	43	5.8	43	88	1	338	25	11	32	31	1.91
130286--130533	86	2.9	85	89	1	381	25	11	32	31	1.91
130600--130647	22	2.2	22	100	0	96	25	16	27	31	1.97
130623--130710	42	2.1	42	86	0	122	25	18	21	35	1.95
130687--130997	90	3.5	90	91	3	502	26	18	21	32	1.97
130955--131068	42	2.7	41	73	9	106	26	25	20	28	1.99
131251--131360	36	3.0	36	81	6	125	27	17	16	39	1.91
131338--131426	29	3.0	27	81	14	88	35	17	11	34	1.86
133070--133107	18	2.2	17	86	9	51	21	36	0	42	1.53
134808--134869	21	2.9	20	75	15	70	20	24	30	24	1.99
140609--140785	91	1.9	91	94	0	309	40	14	20	25	1.90
140509--140927	230	1.8	230	92	0	703	37	16	20	25	1.93

Tables:   1

The End!