Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001789.1 Hibiscus syriacus cultivar Beakdansim tig00003610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37630

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6866--6919
26
2.0
28
89
7
85
53
0
0
46
1.00
8133--8176
19
2.3
19
88
0
61
29
34
11
25
1.91
8142--8178
19
1.9
19
100
0
74
27
29
10
32
1.90
9735--9799
27
2.4
27
80
14
73
41
0
1
56
1.08
10418--10449
16
2.0
16
93
0
55
78
6
0
15
0.95
11897--11941
3
15.0
3
100
0
90
66
0
0
33
0.92
15010--15088
20
4.0
20
73
14
74
32
15
16
35
1.90
18357--18395
20
1.9
20
89
5
60
53
0
0
46
1.00
18393--18442
17
3.1
16
80
11
57
66
2
0
32
1.03
18732--18808
31
2.5
31
85
6
95
41
6
11
40
1.67
18725--18808
30
2.8
30
83
5
98
41
5
11
40
1.66
22242--22281
21
1.9
21
94
0
71
30
15
7
47
1.72
22276--22374
33
3.0
33
94
1
164
32
7
15
45
1.73
22360--22414
13
4.2
13
75
13
58
34
3
12
49
1.59
22605--22652
21
2.3
21
88
0
69
25
22
25
27
2.00
22617--22657
21
2.0
21
95
0
73
19
21
24
34
1.97
22826--22881
15
3.6
15
79
9
67
32
12
12
42
1.80
22845--22878
18
1.9
18
94
5
61
38
11
11
38
1.79
24284--24392
57
1.9
57
94
0
191
27
12
20
39
1.89
32312--32351
21
2.0
19
85
9
53
57
0
2
40
1.12
32367--32434
17
4.0
17
78
14
61
44
0
0
55
0.99
34222--34286
32
2.0
32
91
5
105
41
6
7
44
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34221--34273
16
3.3
16
71
10
54
43
5
9
41
1.61
35797--35939
65
2.2
64
85
7
191
28
23
20
27
1.99
35911--35959
19
2.6
19
84
9
57
24
28
20
26
1.99
36472--36631
65
2.5
65
83
6
200
30
22
18
28
1.97
36619--36670
19
2.7
19
96
0
95
21
28
21
28
1.98

Tables:   1

The End!