genome.fa.s179.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000179.1 Hibiscus syriacus cultivar Beakdansim tig00000314_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120636

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5606--5664	26	2.3	26	91	2	93	52	1	10	35	1.45
6769--6853	20	4.2	20	76	8	93	37	27	12	22	1.91
6816--7039	77	2.9	77	85	2	207	29	17	20	32	1.96
6889--6936	20	2.4	20	96	0	87	27	14	27	31	1.95
6965--7016	21	2.5	21	90	3	88	25	15	26	32	1.95
6845--7051	77	2.7	77	88	2	308	28	16	21	32	1.96
7001--7088	37	2.4	37	84	3	106	27	17	21	34	1.95
7036--7165	57	2.3	56	87	2	179	28	13	20	38	1.89
7144--7185	20	2.1	20	90	0	66	28	14	23	33	1.94
7081--7239	77	2.1	77	92	0	264	27	14	20	37	1.92
7158--7282	57	2.2	57	91	0	196	26	15	22	36	1.93
7035--7320	134	2.1	135	85	2	387	27	13	21	36	1.92
7158--7299	57	2.5	57	87	0	176	26	16	21	35	1.94
7292--7345	20	2.7	20	82	2	63	22	12	33	31	1.92
7771--7819	24	2.1	23	88	11	73	30	12	14	42	1.82
9031--9087	29	2.0	29	92	0	96	31	21	8	38	1.84
10592--10619	8	3.5	8	100	0	56	89	0	0	10	0.49
10695--10733	17	2.2	18	86	4	53	66	0	10	23	1.22
14573--14623	21	2.4	21	96	0	93	27	1	11	58	1.44
15050--15083	4	8.5	4	93	0	59	52	23	0	23	1.47
15308--15333	2	13.0	2	100	0	52	50	0	0	50	1.00
19448--19481	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22266--22312	23	2.0	23	95	0	85	23	2	25	48	1.62
25788--25842	25	2.2	25	78	18	62	41	0	16	41	1.48
26077--26126	21	2.4	21	96	0	91	40	10	14	36	1.79
27282--27334	21	2.5	21	81	0	61	20	24	18	35	1.95
27332--27407	20	3.8	20	74	5	73	40	22	17	19	1.91
27392--27448	20	2.9	20	87	7	73	29	19	22	28	1.98
30871--30990	19	6.5	19	72	15	108	44	20	21	13	1.86
30871--30990	39	3.2	38	78	12	108	44	20	21	13	1.86
30968--31041	33	2.2	33	85	0	103	45	16	24	13	1.83
31068--31126	19	3.4	19	68	22	56	13	18	18	49	1.80
31233--31269	14	2.6	14	91	0	65	45	21	0	32	1.52
32580--32646	21	3.2	21	68	4	55	19	20	35	23	1.95
32580--32702	42	2.9	41	79	7	113	23	17	36	21	1.95
34631--34702	20	3.6	19	83	5	81	13	15	19	51	1.76
35266--35448	20	9.1	20	72	7	136	20	17	22	39	1.92
35266--35451	40	4.6	40	81	2	219	20	17	22	39	1.92
35302--35474	81	2.2	80	81	5	188	21	17	22	38	1.93
35460--35513	21	2.6	21	91	2	83	14	16	24	44	1.85
35458--35525	21	3.3	20	79	6	64	22	16	22	39	1.92
35565--35616	20	2.6	20	75	6	61	15	21	30	32	1.94
38733--38787	25	2.2	25	78	18	62	41	0	16	41	1.48
39097--39203	31	3.4	29	76	11	88	30	16	14	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40290--40479	104	1.8	104	87	0	281	35	12	13	39	1.81
44571--44705	42	3.3	40	82	9	155	46	17	11	23	1.81
44589--44705	42	2.8	40	86	6	162	47	20	10	22	1.80
49130--49257	59	2.2	59	84	0	157	28	16	25	29	1.97
63269--63299	16	1.9	16	93	0	53	16	19	25	38	1.92
64501--64814	159	2.0	155	85	7	427	49	16	4	28	1.66
64694--64773	28	2.9	27	79	18	92	55	21	1	22	1.51
64668--64773	29	3.8	26	76	14	86	55	18	1	23	1.52
64819--64975	74	2.1	74	88	3	226	31	9	13	45	1.76
64810--64975	75	2.2	75	86	3	228	31	9	13	44	1.77
64969--65044	29	2.5	30	79	12	84	23	1	18	56	1.49
66189--66937	373	2.0	373	99	0	1482	37	18	12	31	1.89
68776--68831	20	2.8	20	83	0	76	35	5	19	39	1.75
74197--74229	15	2.2	15	94	0	57	36	12	3	48	1.56
78649--78673	2	12.5	2	100	0	50	52	0	0	48	1.00
89652--89697	2	23.0	2	100	0	92	50	0	0	50	1.00
95054--95117	31	2.0	32	84	3	85	42	9	12	35	1.75
96588--96618	16	1.9	16	93	0	53	29	3	3	64	1.25
100041--100088	14	3.6	14	75	11	55	68	10	2	18	1.28
100045--100088	13	3.4	13	78	12	54	68	11	2	18	1.30
102334--102367	9	3.9	9	84	7	52	61	2	0	35	1.11
102330--102368	17	2.4	17	95	4	71	61	5	0	33	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103186--103381	86	2.3	86	90	0	320	21	15	26	36	1.94
104011--104066	13	4.2	13	78	15	53	66	5	7	21	1.37
104000--104054	26	2.1	27	86	10	78	65	5	7	21	1.38
105049--105088	19	2.1	20	86	9	57	50	12	15	22	1.77
105378--105424	24	2.0	22	84	8	58	55	6	2	36	1.37
108309--108502	69	2.8	68	86	9	241	38	11	2	47	1.53
108352--108481	34	3.9	32	72	21	99	37	12	2	47	1.54
108309--108502	71	2.8	68	86	7	241	38	11	2	47	1.53
108483--108564	19	4.2	18	77	11	58	42	6	2	48	1.41
111865--111951	31	2.8	31	77	10	88	42	2	2	52	1.26
112518--112604	31	2.8	30	81	10	95	54	3	1	41	1.25
112513--112580	19	3.5	20	73	15	54	54	1	2	41	1.24
115089--115137	24	2.0	25	84	11	66	51	0	10	38	1.36
116151--116284	60	2.2	59	88	2	187	30	20	6	42	1.77
116431--116569	60	2.3	61	84	7	169	35	5	24	33	1.79
116431--116600	60	2.8	60	80	9	161	37	5	23	33	1.79
117417--117639	42	5.3	42	93	1	394	20	20	23	35	1.96
118184--118314	21	6.2	21	84	3	174	23	20	25	29	1.99
118184--118314	42	3.1	42	86	4	201	23	20	25	29	1.99
120143--120168	2	13.0	2	100	0	52	50	50	0	0	1.00

Tables:   1

The End!