Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001790.1 Hibiscus syriacus cultivar Beakdansim tig00003612_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92352
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:547 original size:162 final size:169
Alignment explanation
Indices: 213--550 Score: 546
Period size: 174 Copynumber: 2.0 Consensus size: 169
203 ATGATTAGTG
213 TTTAATTAATTAATTTAGGTCTGGAAAACATTTAATTATATATCCCGCACAAACCGAATGAACCT
1 TTTAATTAATTAATTTAGGTCTGGAAAACATTTAATTATATATCCCGCACAAACCGAATGAACCT
* *
278 CAGTGATAAAGAATTATTGTTATTCTTTGAGGACCTAAGTCCGAACACCGTAAATACTAGAGATT
66 CAGTAATAAAAAATTATTGTTATTCTTTGAGGACCTAAGT----ACACCGTAAATACTA-AGATT
*
343 TGAGCATTCAATGTCGAACTGTTGAGAGATAATATCAACTATCA
126 TGAGCATTCAATGTCGAACGGTTGAGAGATAATATCAACTATCA
387 TTTAATTAATTAATTTAGGTCTGGAAAACATTTAATTATATATCCCGCACAAACCGAATG-ACCT
1 TTTAATTAATTAATTTAGGTCTGGAAAACATTTAATTATATATCCCGCACAAACCGAATGAACCT
*
451 CCGTAATAAAAAATTA-TG-TATTCTTTGAGGACCTAAGT-C-CCGTAAATACT-AGATTTGAGC
66 CAGTAATAAAAAATTATTGTTATTCTTTGAGGACCTAAGTACACCGTAAATACTAAGATTTGAGC
511 ATTCAATGTCGAA-GGTTGAGAGATAATATCAACTATCA
131 ATTCAATGTCGAACGGTTGAGAGATAATATCAACTATCA
549 TT
1 TT
551 ATTATCTCAA
Statistics
Matches: 160, Mismatches: 4, Indels: 12
0.91 0.02 0.07
Matches are distributed among these distances:
162 26 0.16
163 23 0.14
165 11 0.07
166 1 0.01
171 20 0.12
172 2 0.01
173 17 0.11
174 60 0.38
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (169 bp):
TTTAATTAATTAATTTAGGTCTGGAAAACATTTAATTATATATCCCGCACAAACCGAATGAACCT
CAGTAATAAAAAATTATTGTTATTCTTTGAGGACCTAAGTACACCGTAAATACTAAGATTTGAGC
ATTCAATGTCGAACGGTTGAGAGATAATATCAACTATCA
Found at i:4247 original size:171 final size:173
Alignment explanation
Indices: 4034--4368 Score: 541
Period size: 171 Copynumber: 1.9 Consensus size: 173
4024 AAATTTTAAG
*
4034 TATATTATATATAACATATGGGGTCAGCCCAAACCATTTAAAACCCAATTAATAATTTAAGATCC
1 TATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAACCCAATTAATAATTTAAGATCC
* * *
4099 AATAA-TTTTAAACCTAAATCAATATTAATTAATT-AAAATTTTATATAAAATTTTTATTTTATA
66 AATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATGTATATAAAATTTATATTTTATA
*
4162 ATTATATATTA-TTAAATTAATTGTAAACTTTTTAATTAAAAA
131 ATTATATATTATTTAAATTAATTATAAACTTTTTAATTAAAAA
* * * **
4204 TATATATATATATAACATATGGGCTCTGCCTAAATCATTTAAAATTCAATTAATAATTTAAGATC
1 TATAT-TATATATAACATATGGGCTCAGCCCAAACCATTTAAAACCCAATTAATAATTTAAGATC
*
4269 CAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATGTATCTAAAATTTATATTTTAT
65 CAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATGTATATAAAATTTATATTTTAT
4334 AATTATATATTATTTAAATTAATTATAAACTTTTT
130 AATTATATATTATTTAAATTAATTATAAACTTTTT
4369 TTTTGAATTA
Statistics
Matches: 150, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
170 5 0.03
171 59 0.39
172 29 0.19
173 36 0.24
174 21 0.14
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.42
Consensus pattern (173 bp):
TATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAACCCAATTAATAATTTAAGATCC
AATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATGTATATAAAATTTATATTTTATA
ATTATATATTATTTAAATTAATTATAAACTTTTTAATTAAAAA
Found at i:4377 original size:20 final size:22
Alignment explanation
Indices: 4354--4394 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
4344 TATTTAAATT
*
4354 AATTATAAACT-TTT-TTTTTG
1 AATTAAAAACTATTTATTTTTG
4374 AATTAAAAACTATTTATTTTT
1 AATTAAAAACTATTTATTTTT
4395 TATATAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 3 0.17
22 5 0.28
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (22 bp):
AATTAAAAACTATTTATTTTTG
Found at i:4824 original size:60 final size:60
Alignment explanation
Indices: 4756--4907 Score: 166
Period size: 60 Copynumber: 2.5 Consensus size: 60
4746 TTGATGAATT
* * * * * *
4756 GGGATGAAATTGGAA-GATCTAAATATTTTGA-GACAAATTTAGAATGAGATTCATAGTTTG
1 GGGATGAAATTGGAATG-T-TAAAAAGTTTAAGGACAAATTTAAAATGAGAGTCATACTTTG
*
4816 GGGATGAAATTGGAATGTTAAAAAGTTTAAGGACTAATTTAAAATGAGAGTCATACTTTG
1 GGGATGAAATTGGAATGTTAAAAAGTTTAAGGACAAATTTAAAATGAGAGTCATACTTTG
* * *
4876 AGGATGAAATAT-GAATGTTTAAAATTTTAAGG
1 GGGATGAAAT-TGGAATGTTAAAAAGTTTAAGG
4908 GTCATAGTTT
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
59 9 0.11
60 68 0.86
61 2 0.03
ACGTcount: A:0.40, C:0.04, G:0.23, T:0.33
Consensus pattern (60 bp):
GGGATGAAATTGGAATGTTAAAAAGTTTAAGGACAAATTTAAAATGAGAGTCATACTTTG
Found at i:5228 original size:17 final size:18
Alignment explanation
Indices: 5189--5228 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
5179 GAATAATTAT
5189 TAATTTAAACATGTGTCA
1 TAATTTAAACATGTGTCA
5207 TAATTTAGAACATG-GT-A
1 TAATTTA-AACATGTGTCA
5224 TAATT
1 TAATT
5229 GAATTGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 9 0.43
19 6 0.29
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (18 bp):
TAATTTAAACATGTGTCA
Found at i:21404 original size:84 final size:84
Alignment explanation
Indices: 21307--21504 Score: 387
Period size: 84 Copynumber: 2.4 Consensus size: 84
21297 TTGCATTTCG
*
21307 CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCGAAATTCGT
1 CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCCAAATTCGT
21372 TGCGATAGTCTACAGTTGT
66 TGCGATAGTCTACAGTTGT
21391 CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCCAAATTCGT
1 CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCCAAATTCGT
21456 TGCGATAGTCTACAGTTGT
66 TGCGATAGTCTACAGTTGT
21475 CGTTGCGATAGTTGAAAATCGCGTTGCGAT
1 CGTTGCGATAGTTGAAAATCGCGTTGCGAT
21505 TTTCCATTTC
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 113 1.00
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (84 bp):
CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCCAAATTCGT
TGCGATAGTCTACAGTTGT
Found at i:21430 original size:43 final size:43
Alignment explanation
Indices: 21307--21504 Score: 298
Period size: 41 Copynumber: 4.7 Consensus size: 43
21297 TTGCATTTCG
21307 CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTTGT
* *
21350 CGTTGCGAT-TTTCG-AAAT-TCGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTT-GAAAATCGCGTTGCGATAGTCTACAGTTGT
21391 CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTTGT
* ** *
21434 CGTTGCGAT-TTTCCAAAT-TCGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTTGT
21475 CGTTGCGATAGTTGAAAATCGCGTTGCGAT
1 CGTTGCGATAGTTGAAAATCGCGTTGCGAT
21505 TTTCCATTTC
Statistics
Matches: 137, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
41 63 0.46
42 24 0.18
43 50 0.36
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (43 bp):
CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTCTACAGTTGT
Found at i:21524 original size:63 final size:61
Alignment explanation
Indices: 21327--21546 Score: 191
Period size: 63 Copynumber: 3.5 Consensus size: 61
21317 GTTGAAAATC
* * * * *
21327 GCGTTGCGATAGTCTACAGTTGTCGTTGCGAT-TTTCG-AAATTCGTTGCGATAGTCTACAGTT
1 GCGTTGCGATAGTCTACAGTTGTCGTTGCGATAGTT-GAAAATGCGTTGCGAT--TTTCCAATT
* * * **
21389 GTCGTTGCGATAGT-TGAAAATCG-CGTTGCGATAGTCT-ACAGTTGTCGTTGCGATTTTCCAAA
1 G-CGTTGCGATAGTCT-ACAGTTGTCGTTGCGATAGT-TGA-AAATG-CGTTGCGATTTTCC-AA
21451 TT
60 TT
*
21453 -CGTTGCGATAGTCTACAGTTGTCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTT
1 GCGTTGCGATAGTCTACAGTTGTCGTTGCGATAGTTGAAAAT-GCGTTGCGATTTTCCAATT
*
21514 CGCGTTGCGATAGTCTACAGTTGTCATTGCGAT
1 -GCGTTGCGATAGTCTACAGTTGTCGTTGCGAT
21547 TTTCCAAATT
Statistics
Matches: 127, Mismatches: 17, Indels: 27
0.74 0.10 0.16
Matches are distributed among these distances:
61 3 0.02
62 44 0.35
63 65 0.51
64 6 0.05
65 9 0.07
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.36
Consensus pattern (61 bp):
GCGTTGCGATAGTCTACAGTTGTCGTTGCGATAGTTGAAAATGCGTTGCGATTTTCCAATT
Found at i:22121 original size:6 final size:6
Alignment explanation
Indices: 22110--22154 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
22100 TCCTGTCTCG
22110 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
22155 AATACGTGTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.00, C:0.16, G:0.51, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:22372 original size:21 final size:20
Alignment explanation
Indices: 22314--22378 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
22304 AGATCGCGTT
22314 GCGATTTCAACTATCGCAAC
1 GCGATTTCAACTATCGCAAC
* ** *
22334 GCGAAATGGAA-AATCGCAAC
1 GCG-ATTTCAACTATCGCAAC
22354 GCGATTTTCAACTATCGCAAC
1 GCGA-TTTCAACTATCGCAAC
22375 GCGA
1 GCGA
22379 ATTTGCGATA
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
19 1 0.03
20 17 0.50
21 16 0.47
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (20 bp):
GCGATTTCAACTATCGCAAC
Found at i:29196 original size:29 final size:29
Alignment explanation
Indices: 29048--29191 Score: 263
Period size: 29 Copynumber: 5.0 Consensus size: 29
29038 CAGTGGCAAC
29048 ATAGGTCGCCATGCACGCCCGGCGTCCTT
1 ATAGGTCGCCATGCACGCCCGGCGTCCTT
29077 ATAGGTCGCCATGCACGCCCGGCGTCCTT
1 ATAGGTCGCCATGCACGCCCGGCGTCCTT
29106 ATAGGTCGCCATGCACGCCCGGCGTCCTT
1 ATAGGTCGCCATGCACGCCCGGCGTCCTT
29135 ATAGGTCGCCATGCACGCCCGGCGTCC-T
1 ATAGGTCGCCATGCACGCCCGGCGTCCTT
*
29163 ATAAGGACGCCATGCACGCCCGGCGTCCT
1 AT-AGGTCGCCATGCACGCCCGGCGTCCT
29192 ATAAGATTTG
Statistics
Matches: 112, Mismatches: 1, Indels: 3
0.97 0.01 0.03
Matches are distributed among these distances:
28 3 0.03
29 109 0.97
ACGTcount: A:0.15, C:0.38, G:0.28, T:0.19
Consensus pattern (29 bp):
ATAGGTCGCCATGCACGCCCGGCGTCCTT
Found at i:29447 original size:29 final size:29
Alignment explanation
Indices: 29414--29484 Score: 133
Period size: 29 Copynumber: 2.4 Consensus size: 29
29404 GGCGACATCG
29414 CGACATGGTAGGTCGCCATGGAGTCCCGA
1 CGACATGGTAGGTCGCCATGGAGTCCCGA
*
29443 CGACATGGTAGGTCGCCATGGAGTCCCTA
1 CGACATGGTAGGTCGCCATGGAGTCCCGA
29472 CGACATGGTAGGT
1 CGACATGGTAGGT
29485 GGTAGGGTAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.21, C:0.25, G:0.34, T:0.20
Consensus pattern (29 bp):
CGACATGGTAGGTCGCCATGGAGTCCCGA
Found at i:29495 original size:12 final size:12
Alignment explanation
Indices: 29478--29502 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
29468 CCTACGACAT
29478 GGTAGGTGGTAG
1 GGTAGGTGGTAG
29490 GGTAGGTGGTAG
1 GGTAGGTGGTAG
29502 G
1 G
29503 TCGCCATGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.60, T:0.24
Consensus pattern (12 bp):
GGTAGGTGGTAG
Found at i:29581 original size:35 final size:35
Alignment explanation
Indices: 29542--29609 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
29532 TCCTGCATCG
*
29542 CGACCCAGCTTTAACTGTAGCACTCATGCATGCAA
1 CGACCAAGCTTTAACTGTAGCACTCATGCATGCAA
*
29577 CGACCAAGCTTTAACTGTATCACTCATGCATGC
1 CGACCAAGCTTTAACTGTAGCACTCATGCATGC
29610 GTTGCATCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (35 bp):
CGACCAAGCTTTAACTGTAGCACTCATGCATGCAA
Found at i:30071 original size:21 final size:21
Alignment explanation
Indices: 30046--30089 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
30036 AATCTAGTTA
*
30046 ATTAGTTTGTTAGTATAAATT
1 ATTAGTTGGTTAGTATAAATT
* *
30067 ATTAGTTGGTTAGTTTAAGTT
1 ATTAGTTGGTTAGTATAAATT
30088 AT
1 AT
30090 ATATTATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.18, T:0.52
Consensus pattern (21 bp):
ATTAGTTGGTTAGTATAAATT
Found at i:30642 original size:23 final size:23
Alignment explanation
Indices: 30599--30642 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
30589 TATTGTGTTT
*
30599 AAAAATATTTAGTGTTGTTTAAA
1 AAAAATATTTAGTGTTATTTAAA
* *
30622 AAAAATATTTTGTTTTATTTA
1 AAAAATATTTAGTGTTATTTA
30643 TATTGTATGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (23 bp):
AAAAATATTTAGTGTTATTTAAA
Found at i:30901 original size:26 final size:25
Alignment explanation
Indices: 30872--30936 Score: 62
Period size: 26 Copynumber: 2.6 Consensus size: 25
30862 AAATCATATT
*
30872 ATTATTAAATCATTAAATATCAAATC
1 ATTATTAAAT-AATAAATATCAAATC
* *
30898 ATTAGATT-AATAATAATTATTAAATC
1 ATT--ATTAAATAATAAATATCAAATC
30924 ATTATT-AATAATA
1 ATTATTAAATAATA
30937 TTAGTAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 10 0.29
26 18 0.53
27 3 0.09
28 3 0.09
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.42
Consensus pattern (25 bp):
ATTATTAAATAATAAATATCAAATC
Found at i:33858 original size:26 final size:26
Alignment explanation
Indices: 33832--34183 Score: 240
Period size: 26 Copynumber: 14.2 Consensus size: 26
33822 GATGATTTAG
*
33832 TAATGATTTGATAATAATCATTATAG
1 TAATGATTTGATAATAATCATTATAA
33858 TAATGATTTGATAATAATCA-TATTAA
1 TAATGATTTGATAATAATCATTA-TAA
33884 TAATGATTT-AGTAATAATCATTATAA
1 TAATGATTTGA-TAATAATCATTATAA
* * *
33910 AAATGATTTAATAATGAT--TTA-AA
1 TAATGATTTGATAATAATCATTATAA
* * * * * * *
33933 TATTTA-ATGAT-TTGATGATT-TAG
1 TAATGATTTGATAATAATCATTATAA
*
33956 TAATGATTTGATAATAATCATTATAG
1 TAATGATTTGATAATAATCATTATAA
33982 TAATGATTTGATAATAATCATTATAA
1 TAATGATTTGATAATAATCATTATAA
*
34008 TAATGATTT-AGTCATAATCATTATAA
1 TAATGATTTGA-TAATAATCATTATAA
* * *
34034 AAATGATTTAATAATGAT--TTA-AA
1 TAATGATTTGATAATAATCATTATAA
* * * * * * *
34057 TATTTA-ATGAT-TTGATGATT-TAG
1 TAATGATTTGATAATAATCATTATAA
34080 TAATGATTTGATAATAATCATTATAA
1 TAATGATTTGATAATAATCATTATAA
* * *
34106 TAATGATTTTATAATAATTATTAT-G
1 TAATGATTTGATAATAATCATTATAA
* * *
34131 TTATTATTT-AGTAATTAT--TTATAA
1 TAATGATTTGA-TAATAATCATTATAA
* * *
34155 TAATGATTTAATACTAATGATT-TAA
1 TAATGATTTGATAATAATCATTATAA
34180 TAAT
1 TAAT
34184 TATTACTAAT
Statistics
Matches: 257, Mismatches: 46, Indels: 47
0.73 0.13 0.13
Matches are distributed among these distances:
21 8 0.03
22 6 0.02
23 28 0.11
24 27 0.11
25 37 0.14
26 147 0.57
27 4 0.02
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (26 bp):
TAATGATTTGATAATAATCATTATAA
Found at i:33994 original size:124 final size:124
Alignment explanation
Indices: 33774--34167 Score: 663
Period size: 124 Copynumber: 3.2 Consensus size: 124
33764 ATGTATTTAT
33774 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
33839 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATATTAATAATGATTTAGTAA
66 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATATTAATAATGATTTAGTAA
33898 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
*
33963 TTGATAATAATCATTATAGTAATGATTTGATAATAATCAT-TATAATAATGATTTAGTCA
66 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATAT-TAATAATGATTTAGTAA
34022 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
* * * * *
34087 TTGATAATAATCATTATAATAATGATTTTATAATAAT--TATTATGTTATTATTTAGTAA
66 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATATTA-ATAATGATTTAGTAA
* *
34145 TTAT--TTATAATAATGATTTAATA
1 TAATCATTATAAAAATGATTTAATA
34168 CTAATGATTT
Statistics
Matches: 258, Mismatches: 9, Indels: 9
0.93 0.03 0.03
Matches are distributed among these distances:
121 18 0.07
122 3 0.01
123 16 0.06
124 221 0.86
ACGTcount: A:0.43, C:0.02, G:0.10, T:0.45
Consensus pattern (124 bp):
TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
TTGATAATAATCATTATAGTAATGATTTGATAATAATCATATTAATAATGATTTAGTAA
Found at i:34174 original size:14 final size:14
Alignment explanation
Indices: 34142--34183 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
34132 TATTATTTAG
*
34142 TAATTATTT-ATAA
1 TAATGATTTAATAA
*
34155 TAATGATTTAATAC
1 TAATGATTTAATAA
34169 TAATGATTTAATAA
1 TAATGATTTAATAA
34183 T
1 T
34184 TATTACTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
13 8 0.32
14 17 0.68
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (14 bp):
TAATGATTTAATAA
Found at i:34206 original size:38 final size:38
Alignment explanation
Indices: 34136--34209 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
34126 TTATGTTATT
* **
34136 ATTTAGTAATTATTTATAATAATGATTTAATACTAATG
1 ATTTAATAATTATTTATAATAATGATAGAATACTAATG
*
34174 ATTTAATAATTA-TTACTAATAATTATAGAATACTAA
1 ATTTAATAATTATTTA-TAATAATGATAGAATACTAA
34210 CAAATGAGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 3 0.10
38 28 0.90
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.45
Consensus pattern (38 bp):
ATTTAATAATTATTTATAATAATGATAGAATACTAATG
Found at i:34416 original size:17 final size:17
Alignment explanation
Indices: 34391--34423 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
34381 ACTAAATATT
*
34391 TAATTATTTGATACTAG
1 TAATGATTTGATACTAG
34408 TAATGATTTGATACTA
1 TAATGATTTGATACTA
34424 AACATCATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (17 bp):
TAATGATTTGATACTAG
Found at i:36733 original size:32 final size:34
Alignment explanation
Indices: 36658--36739 Score: 100
Period size: 34 Copynumber: 2.5 Consensus size: 34
36648 CCAAACCCTT
* *
36658 AAAC-AACTAATAAAATATTTTTTTATATAACTA
1 AAACTAACTAATAAACTATTTTTTCATATAACTA
36691 AAACTAACTAATAAACTATTTTTTCATTATAA-T-
1 AAACTAACTAATAAACTATTTTTTCA-TATAACTA
*
36724 ATACT-ACTAATAAACT
1 AAACTAACTAATAAACT
36740 TACTAACTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
32 11 0.25
33 8 0.18
34 20 0.45
35 5 0.11
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (34 bp):
AAACTAACTAATAAACTATTTTTTCATATAACTA
Found at i:36848 original size:42 final size:43
Alignment explanation
Indices: 36799--36911 Score: 124
Period size: 42 Copynumber: 2.6 Consensus size: 43
36789 AACTATTTAA
36799 CTAACAAAACTAATTAAATAATTTTTTTT-A-TATAACTAACTAT
1 CTAACAAAACTAATTAAATAATTTTTTTTAACTAT-A-TAACTAT
* * *
36842 -TAACAAAACAAACTAATTAATTATTTTTTAACTATATAACTAT
1 CTAACAAAACTAATTAAATAATT-TTTTTTAACTATATAACTAT
* *
36885 CAAACATATACTAATTAAATAATTTTT
1 CTAACA-AAACTAATTAAATAATTTTT
36912 AATTTATGTA
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
42 19 0.33
43 13 0.23
44 9 0.16
45 16 0.28
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.41
Consensus pattern (43 bp):
CTAACAAAACTAATTAAATAATTTTTTTTAACTATATAACTAT
Found at i:36859 original size:46 final size:47
Alignment explanation
Indices: 36780--36870 Score: 125
Period size: 46 Copynumber: 2.0 Consensus size: 47
36770 CAACAAACAA
*
36780 ATATAACTTAACTATTTAACTAACAAAACTAATTAAATAATTTTTTTT
1 ATATAACTTAACTATTTAACAAACAAAACTAATT-AATAATTTTTTTT
*
36828 ATATAAC-TAACTA-TTAACAAA-ACAAACTAATTAATTATTTTTT
1 ATATAACTTAACTATTTAACAAACA-AAACTAATTAATAATTTTTT
36871 AACTATATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
45 11 0.28
46 16 0.40
47 6 0.15
48 7 0.17
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (47 bp):
ATATAACTTAACTATTTAACAAACAAAACTAATTAATAATTTTTTTT
Found at i:36878 original size:47 final size:47
Alignment explanation
Indices: 36780--36883 Score: 124
Period size: 46 Copynumber: 2.2 Consensus size: 47
36770 CAACAAACAA
* *
36780 ATATAACTTAACTATTTAACTAACAAAACTAATTAAATAATTTTTTTT
1 ATATAAC-TAACTATTTAACAAACAAAACTAATTAAATAATTTTTTCT
*
36828 ATATAACTAACTA-TTAACAAA-ACAAACTAATT-AATTATTTTTTAACT
1 ATATAACTAACTATTTAACAAACA-AAACTAATTAAATAATTTTTT--CT
36875 ATATAACTA
1 ATATAACTA
36884 TCAAACATAT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
45 11 0.22
46 16 0.32
47 16 0.32
48 7 0.14
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (47 bp):
ATATAACTAACTATTTAACAAACAAAACTAATTAAATAATTTTTTCT
Found at i:36939 original size:41 final size:40
Alignment explanation
Indices: 36851--36939 Score: 90
Period size: 41 Copynumber: 2.2 Consensus size: 40
36841 TTAACAAAAC
* *
36851 AAACTAATTAATTATTTTTTAACTATATAACTATCAAACAT
1 AAACTAATTAAATAATTTTTAACTATATAACTAT-AAACAT
* * * *
36892 ATACTAATTAAATAATTTTTAATTTATGTATACTAT-AACTT
1 AAACTAATTAAATAATTTTTAA-CTATATA-ACTATAAACAT
36933 AAACTAA
1 AAACTAA
36940 CAATCATATA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
41 29 0.74
42 5 0.13
43 5 0.13
ACGTcount: A:0.46, C:0.10, G:0.01, T:0.43
Consensus pattern (40 bp):
AAACTAATTAAATAATTTTTAACTATATAACTATAAACAT
Found at i:37004 original size:16 final size:18
Alignment explanation
Indices: 36975--37013 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
36965 ACTAATTAAC
*
36975 ATTTATAATAATAAACTA
1 ATTTATAATAATAAACAA
36993 ATTTA-AAT-ATAAACAA
1 ATTTATAATAATAAACAA
37009 ATTTA
1 ATTTA
37014 CCTTATCTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 12 0.60
17 3 0.15
18 5 0.25
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
ATTTATAATAATAAACAA
Found at i:37062 original size:16 final size:16
Alignment explanation
Indices: 37019--37069 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
37009 ATTTACCTTA
37019 TCTCCCTTTC-TTC-T
1 TCTCCCTTTCTTTCTT
**
37033 TCTTACTTTCCTTTCTT
1 TCTCCCTTT-CTTTCTT
37050 TCTCCCTTTCTTTCTT
1 TCTCCCTTTCTTTCTT
37066 TCTC
1 TCTC
37070 GTGAGCAATC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
14 7 0.23
15 1 0.03
16 14 0.47
17 8 0.27
ACGTcount: A:0.02, C:0.37, G:0.00, T:0.61
Consensus pattern (16 bp):
TCTCCCTTTCTTTCTT
Found at i:37307 original size:50 final size:49
Alignment explanation
Indices: 37244--37341 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 49
37234 CAATAGCTGT
*
37244 AGGCATGCAGCGGGGAGTAGGAGCACGTGAAGTTATCTTGGCATGCATGC
1 AGGCATGCAGCGGGGAGCAGGAGCACGTGAAGTTATCTTGGC-TGCATGC
37294 AGGCATGCAGCGGGGAGCAGGAGCACGTGAAGTTATCTTGGCTGCATG
1 AGGCATGCAGCGGGGAGCAGGAGCACGTGAAGTTATCTTGGCTGCATG
37342 TGCATGCATG
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 6 0.13
50 41 0.87
ACGTcount: A:0.23, C:0.18, G:0.39, T:0.19
Consensus pattern (49 bp):
AGGCATGCAGCGGGGAGCAGGAGCACGTGAAGTTATCTTGGCTGCATGC
Found at i:37438 original size:29 final size:30
Alignment explanation
Indices: 37376--37442 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
37366 GTGACGCCGG
37376 GGCGACCTACAAGGTCGCCGGGGACTACAT
1 GGCGACCTACAAGGTCGCCGGGGACTACAT
*
37406 GGCGACCTACAAGGTCGCC-GGGACTGCAT
1 GGCGACCTACAAGGTCGCCGGGGACTACAT
37435 GGCGACCT
1 GGCGACCT
37443 CTCCATTGGC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 17 0.47
30 19 0.53
ACGTcount: A:0.21, C:0.31, G:0.34, T:0.13
Consensus pattern (30 bp):
GGCGACCTACAAGGTCGCCGGGGACTACAT
Found at i:37471 original size:32 final size:32
Alignment explanation
Indices: 37429--37507 Score: 149
Period size: 32 Copynumber: 2.5 Consensus size: 32
37419 GTCGCCGGGA
37429 CTGCATGGCGACCTCTCCATTGGCTGGCTCGT
1 CTGCATGGCGACCTCTCCATTGGCTGGCTCGT
*
37461 TTGCATGGCGACCTCTCCATTGGCTGGCTCGT
1 CTGCATGGCGACCTCTCCATTGGCTGGCTCGT
37493 CTGCATGGCGACCTC
1 CTGCATGGCGACCTC
37508 ACCTCGTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.10, C:0.34, G:0.28, T:0.28
Consensus pattern (32 bp):
CTGCATGGCGACCTCTCCATTGGCTGGCTCGT
Found at i:37643 original size:29 final size:29
Alignment explanation
Indices: 37601--37660 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
37591 CTCCCGTATG
37601 TCGCCTGGATTGCATGGCGTCCTACAAGA
1 TCGCCTGGATTGCATGGCGTCCTACAAGA
*
37630 TCGCCTGGATTGCATGGCGTCCTACGAGA
1 TCGCCTGGATTGCATGGCGTCCTACAAGA
37659 TC
1 TC
37661 ACTGTAGAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.25
Consensus pattern (29 bp):
TCGCCTGGATTGCATGGCGTCCTACAAGA
Found at i:37891 original size:44 final size:44
Alignment explanation
Indices: 37828--37917 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
37818 GATAAATTAT
37828 ACCGTTCCTAACTAAACTTTACTCTCTCCTATTTTACTCACTAA
1 ACCGTTCCTAACTAAACTTTACTCTCTCCTATTTTACTCACTAA
*
37872 ACCGTTCTTAACTAAACTTTACTCTCTCCTATTTTACTCACTAA
1 ACCGTTCCTAACTAAACTTTACTCTCTCCTATTTTACTCACTAA
37916 AC
1 AC
37918 TTTTTAGATT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.28, C:0.31, G:0.02, T:0.39
Consensus pattern (44 bp):
ACCGTTCCTAACTAAACTTTACTCTCTCCTATTTTACTCACTAA
Found at i:39126 original size:3 final size:3
Alignment explanation
Indices: 39118--39161 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
39108 TTACCCTATT
39118 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
39162 TATTATTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:39753 original size:38 final size:38
Alignment explanation
Indices: 39702--39777 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
39692 TCGCCTTTTT
39702 CATAAATAGAGAGAACAAAAGAGCTTTAGATAAGGTTC
1 CATAAATAGAGAGAACAAAAGAGCTTTAGATAAGGTTC
39740 CATAAATAGAGAGAACAAAAGAGCTTTAGATAAGGTTC
1 CATAAATAGAGAGAACAAAAGAGCTTTAGATAAGGTTC
39778 ATCATATGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (38 bp):
CATAAATAGAGAGAACAAAAGAGCTTTAGATAAGGTTC
Found at i:42926 original size:2 final size:2
Alignment explanation
Indices: 42919--42943 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
42909 TCATTGACAT
42919 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
42944 TAAAATTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:45328 original size:12 final size:12
Alignment explanation
Indices: 45311--45347 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
45301 ACAATCGAAA
45311 ATAATATTTTTT
1 ATAATATTTTTT
45323 ATAATATTTTTT
1 ATAATATTTTTT
* *
45335 CTATTATTTTTT
1 ATAATATTTTTT
45347 A
1 A
45348 ACTTTAGGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (12 bp):
ATAATATTTTTT
Found at i:46886 original size:18 final size:18
Alignment explanation
Indices: 46863--46908 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
46853 CAATATTCCT
***
46863 GGTAATCTTATTCCTGTC
1 GGTAATCTTATTCCCACC
46881 GGTAATCTTATTCCCACC
1 GGTAATCTTATTCCCACC
46899 GGTAATCTTA
1 GGTAATCTTA
46909 CATTCCGTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (18 bp):
GGTAATCTTATTCCCACC
Found at i:50019 original size:2 final size:2
Alignment explanation
Indices: 50012--50046 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
50002 TCTGAGGAAA
50012 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
50047 AGAAATGGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:51990 original size:6 final size:6
Alignment explanation
Indices: 51979--52009 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
51969 ATGTATTTTA
51979 TTATAT TTATAT TTATAT TTATATT TTATAT
1 TTATAT TTATAT TTATAT TTATA-T TTATAT
52010 GCAAGTGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTATAT
Found at i:52626 original size:38 final size:38
Alignment explanation
Indices: 52575--52650 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
52565 ATCGCTTTTT
*
52575 CATAAATAGAGAGAACAAAAGAGCTTTAGATAAGGTTC
1 CATAAATAGAGAGAACAAAAGAGATTTAGATAAGGTTC
52613 CATAAATAGAGAGAACAAAAGAGATTTAGATAAGGTTC
1 CATAAATAGAGAGAACAAAAGAGATTTAGATAAGGTTC
52651 ATCATATGCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.49, C:0.09, G:0.21, T:0.21
Consensus pattern (38 bp):
CATAAATAGAGAGAACAAAAGAGATTTAGATAAGGTTC
Found at i:78441 original size:30 final size:30
Alignment explanation
Indices: 78405--78464 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
78395 ACTGCACCCA
78405 AATTCAAGAAAAACATATTAATCGTTAACT
1 AATTCAAGAAAAACATATTAATCGTTAACT
78435 AATTCAAGAAAAACATATTAATCGTTAACT
1 AATTCAAGAAAAACATATTAATCGTTAACT
78465 GATGGTTTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (30 bp):
AATTCAAGAAAAACATATTAATCGTTAACT
Found at i:80893 original size:35 final size:35
Alignment explanation
Indices: 80852--80924 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
80842 GTTGAAACAA
80852 AACCCTAATTCCCACAGTAAGATCTTAACTAAAAC
1 AACCCTAATTCCCACAGTAAGATCTTAACTAAAAC
80887 AACCCTAATTCCCACAGTAAGATCTTAACTAAAAC
1 AACCCTAATTCCCACAGTAAGATCTTAACTAAAAC
80922 AAC
1 AAC
80925 ATAATACAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.44, C:0.29, G:0.05, T:0.22
Consensus pattern (35 bp):
AACCCTAATTCCCACAGTAAGATCTTAACTAAAAC
Found at i:82094 original size:56 final size:56
Alignment explanation
Indices: 82008--82119 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
81998 GCCTTGTGGA
82008 ATTACAGATAAAGAAGTTACATCTTCGAGTAGAGAGACATCTACCGAGCTTCCTTC
1 ATTACAGATAAAGAAGTTACATCTTCGAGTAGAGAGACATCTACCGAGCTTCCTTC
82064 ATTACAGATAAAGAAGTTACATCTTCGAGTAGAGAGACATCTACCGAGCTTCCTTC
1 ATTACAGATAAAGAAGTTACATCTTCGAGTAGAGAGACATCTACCGAGCTTCCTTC
82120 TGAATAAGTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (56 bp):
ATTACAGATAAAGAAGTTACATCTTCGAGTAGAGAGACATCTACCGAGCTTCCTTC
Found at i:83537 original size:49 final size:49
Alignment explanation
Indices: 83479--83625 Score: 222
Period size: 49 Copynumber: 3.0 Consensus size: 49
83469 TGCTATACTA
* *
83479 GCTATGATATCGAATTTAGTTTAAGCACATGATAACTAGTCAAGATAGG
1 GCTATGATATAGAATTTAGTTTAAGCACATGATAACTAGTCAAAATAGG
* * *
83528 GCTATGATATAGAATTTAGTTTAAGCACACGATAAGTAGTCAATATAGG
1 GCTATGATATAGAATTTAGTTTAAGCACATGATAACTAGTCAAAATAGG
* * *
83577 GCTATGATATTGTATTTAGTTTAAGCACATGATACCTAGTCAAAATAGG
1 GCTATGATATAGAATTTAGTTTAAGCACATGATAACTAGTCAAAATAGG
83626 AATATTCAAC
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 88 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.32
Consensus pattern (49 bp):
GCTATGATATAGAATTTAGTTTAAGCACATGATAACTAGTCAAAATAGG
Done.