genome.fa.s1791.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001791.1 Hibiscus syriacus cultivar Beakdansim tig00003615_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100928

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1538--1573	16	2.2	17	90	5	56	27	5	13	52	1.63
4053--4117	32	1.9	34	87	9	98	61	4	3	30	1.31
6520--6586	33	2.0	33	97	0	125	32	28	2	35	1.72
12158--12202	24	1.9	24	90	4	74	11	20	17	51	1.75
17263--17364	51	2.0	51	100	0	204	39	7	21	31	1.82
20512--20609	27	3.5	27	78	8	115	11	48	16	23	1.78
20514--20863	30	12.0	29	78	10	279	12	47	14	25	1.79
20514--20815	57	5.1	56	76	10	248	12	48	14	24	1.78
23929--23984	28	2.0	28	96	0	103	33	21	8	35	1.85
35232--35271	21	2.0	21	85	5	55	27	37	25	10	1.88
40569--40690	63	1.9	63	83	9	160	18	27	27	26	1.98
40569--40653	31	2.7	31	76	8	84	16	29	28	25	1.97
43829--43875	20	2.3	20	88	0	67	46	17	17	19	1.84
44070--44129	28	2.1	28	90	0	93	21	28	18	31	1.97
44298--44466	36	4.7	36	91	1	259	30	23	27	18	1.98
46835--46884	20	2.4	21	83	6	66	42	12	12	34	1.79
46842--46891	20	2.5	20	90	0	73	42	18	14	26	1.87
47010--47137	20	6.4	20	85	1	161	27	19	14	38	1.91
47292--47333	20	2.2	20	91	4	68	28	28	19	23	1.98
47872--47944	24	3.0	24	88	4	67	10	15	24	49	1.76
47882--47937	14	4.3	14	82	17	75	8	14	25	51	1.70
47883--47957	24	3.1	23	90	3	96	12	12	21	54	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48677--48743	16	4.3	16	90	3	93	10	11	19	58	1.62
48675--48735	32	1.9	32	93	0	104	8	14	22	54	1.67
48805--48837	16	2.1	16	100	0	66	6	12	24	57	1.57
49036--49061	13	2.0	13	100	0	52	30	0	0	69	0.89
49270--49315	21	2.1	22	88	4	67	52	0	10	36	1.37
50660--51957	228	5.7	228	89	1	1674	28	23	26	22	1.99
52519--52588	28	2.5	28	83	6	88	28	2	10	58	1.45
52643--52693	23	2.2	23	89	0	75	33	1	7	56	1.39
53646--53692	23	2.0	23	95	0	85	36	0	23	40	1.55
63625--63679	22	2.4	24	80	14	64	50	1	1	45	1.22
63666--63694	5	6.0	5	96	4	51	62	0	0	37	0.96
63639--63690	22	2.3	22	75	15	52	55	1	0	42	1.10
79931--80064	68	2.0	68	86	2	189	50	2	2	44	1.29
80016--80064	18	2.6	19	81	18	59	51	2	4	42	1.32
80116--80175	28	2.1	29	81	12	70	61	3	0	35	1.12
80955--80996	21	2.0	21	100	0	84	33	14	23	28	1.94
86235--86305	32	2.2	31	82	5	88	29	8	21	40	1.82
86286--86351	28	2.4	28	89	5	98	15	9	28	46	1.76
87001--87077	21	3.6	22	77	6	88	20	24	16	37	1.93
87606--87677	20	3.6	19	79	5	72	52	18	15	13	1.74
87621--87684	21	3.1	21	80	6	69	53	17	18	10	1.72
87661--87741	33	2.5	33	89	0	117	46	20	19	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87742--87830	20	4.8	20	73	18	77	12	22	19	46	1.83
89626--89970	93	3.7	93	91	3	565	21	11	19	48	1.80
89516--89970	185	2.5	177	87	7	638	21	12	19	47	1.82
90048--90168	19	6.3	19	88	3	161	49	23	19	7	1.73
90048--90177	39	3.4	38	89	2	179	48	23	19	9	1.77
90048--90167	58	2.1	58	88	3	179	50	22	20	7	1.73
90174--90280	19	5.8	19	70	12	89	13	21	19	45	1.84
90679--90767	42	2.1	42	78	0	97	22	38	15	23	1.93
92143--92177	13	2.6	14	90	4	54	31	0	22	45	1.53
92130--92178	13	3.7	14	76	10	50	28	0	20	51	1.48
92314--92352	19	2.1	19	95	0	69	51	25	12	10	1.71
92358--92483	33	3.8	33	92	0	207	12	22	18	46	1.82
92425--92483	19	3.4	19	66	22	56	13	20	18	47	1.82
92456--92510	20	2.8	19	83	2	65	18	21	21	38	1.94
95870--95957	20	4.3	20	88	7	124	35	18	19	27	1.95
95881--96007	21	6.5	21	76	14	110	37	17	21	23	1.94
95906--96012	56	1.9	55	86	1	151	37	16	23	22	1.94

Tables:   1

The End!