Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001792.1 Hibiscus syriacus cultivar Beakdansim tig00003620_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47614

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2052--2116
28
2.4
28
94
2
114
46
33
7
12
1.70
7852--7921
25
2.8
25
84
4
88
5
12
15
65
1.43
7863--7927
24
2.6
25
85
2
87
4
12
18
64
1.43
8425--8685
2
137.5
2
72
18
166
53
3
1
41
1.27
8421--8686
107
2.5
111
80
12
272
53
3
1
41
1.26
8616--8673
23
2.5
23
80
8
55
48
1
3
46
1.29
9530--9595
25
2.6
25
90
0
96
6
13
16
63
1.48
9538--9599
25
2.5
25
91
0
97
6
14
14
64
1.47
10118--10145
2
14.0
2
100
0
56
50
0
0
50
1.00
10145--10201
2
28.5
2
96
0
105
1
0
47
50
1.11
10219--10432
2
114.5
2
71
22
146
53
3
0
42
1.23
10219--10471
23
11.3
23
70
20
155
53
4
0
41
1.26
10242--10468
103
2.2
101
83
9
289
53
4
0
40
1.28
11840--12061
5
43.2
5
73
17
138
54
3
1
40
1.24
11841--12063
2
121.5
2
68
23
118
54
3
1
40
1.24
16182--16236
13
4.2
13
88
0
83
27
14
16
41
1.87
16177--16229
26
2.0
26
96
0
97
32
15
15
37
1.88
20824--20858
14
2.5
14
100
0
70
8
20
28
42
1.81
32923--33147
2
122.5
2
67
23
122
52
3
1
42
1.27
32923--33147
5
40.8
6
72
20
122
52
3
1
42
1.27
32918--33145
56
4.1
54
78
17
211
53
3
1
41
1.27
32922--33148
46
4.8
48
74
19
176
52
3
1
41
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33062--33167
46
2.3
46
79
9
108
57
3
0
37
1.23
32940--33165
120
1.9
120
86
9
327
53
3
1
40
1.30
43495--43533
20
2.0
19
90
5
60
38
20
12
28
1.89

Tables:   1

The End!