genome.fa.s1794.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001794.1 Hibiscus syriacus cultivar Beakdansim tig00003626_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36389

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1337--1503	83	2.0	83	96	2	309	37	11	17	32	1.86
2734--3513	85	9.4	84	86	4	1000	34	21	18	26	1.96
3954--4090	34	4.0	34	92	4	199	46	3	7	42	1.49
4151--4199	25	2.0	25	87	0	71	32	0	2	65	1.04
4149--4208	30	2.0	29	87	3	84	31	0	1	66	1.01
4151--4253	13	8.6	13	77	15	55	23	0	0	75	0.86
4171--4250	33	2.2	34	87	12	108	18	0	0	81	0.70
4171--4253	7	11.6	7	84	15	100	19	0	0	80	0.71
7244--7281	20	1.9	20	88	0	58	21	26	10	42	1.85
7812--7939	67	1.9	66	81	7	152	39	33	11	14	1.83
8480--8548	29	2.4	28	95	4	120	26	10	10	53	1.66
9347--9385	10	3.8	10	83	6	51	38	25	20	15	1.92
9345--9403	21	2.8	21	84	0	82	40	27	16	15	1.89
11374--11419	19	2.5	19	92	3	76	13	19	19	47	1.81
12011--12126	21	5.6	21	66	7	58	33	24	19	22	1.97
12114--12368	20	12.6	20	72	8	149	37	24	18	19	1.94
12114--12368	41	6.3	40	79	9	198	37	24	18	19	1.94
12114--12370	101	2.6	101	85	7	337	37	24	18	20	1.94
12924--12999	20	3.8	20	85	5	93	51	18	18	11	1.76
13060--13106	20	2.3	20	89	7	69	17	21	23	38	1.93
14809--15170	94	3.9	94	94	0	591	21	12	17	48	1.80
15364--15452	42	2.1	42	80	0	106	21	38	16	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16624--16659	14	2.6	14	95	0	63	33	0	22	44	1.53
16765--16823	19	3.4	19	68	22	65	47	18	20	13	1.82
16769--16844	33	2.3	33	90	0	116	48	19	19	11	1.79
16850--17007	19	8.7	19	70	15	120	13	22	19	44	1.85
16854--16947	33	2.8	33	95	0	161	11	22	19	46	1.81
16920--17006	20	4.5	19	81	5	102	16	20	20	42	1.89
16920--17040	59	2.2	56	82	11	142	15	21	21	41	1.90
17013--17086	20	3.7	20	66	16	53	25	17	24	32	1.97
19329--19359	14	2.3	14	94	5	55	6	9	25	58	1.54
20468--20718	20	12.5	20	75	15	196	19	19	23	37	1.94
20509--20718	40	5.2	40	84	5	253	18	18	24	39	1.92
20509--20718	81	2.6	81	83	7	250	18	18	24	39	1.92
24617--24741	62	2.0	63	90	1	198	48	9	8	33	1.67
24642--24826	62	3.1	59	80	8	162	45	8	6	39	1.59
28363--28415	23	2.3	23	93	0	88	52	15	18	13	1.74

Tables:   1

The End!