Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001796.1 Hibiscus syriacus cultivar Beakdansim tig00003631_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110843
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:5592 original size:31 final size:31
Alignment explanation
Indices: 5554--5643 Score: 101
Period size: 35 Copynumber: 2.8 Consensus size: 31
5544 TACACCGGGA
5554 CAAAGATATATTCCCTTTATCCAAGGCGACG
1 CAAAGATATATTCCCTTTATCCAAGGCGACG
** *
5585 CAAAGATATATT-AATAAGTGCCATCCAAGGCGACG
1 CAAAGATATATTCCCT---T--TATCCAAGGCGACG
5620 CAAAGATATATTCCCTTTATCCAA
1 CAAAGATATATTCCCTTTATCCAA
5644 AAGCCAGACA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
30 1 0.02
31 18 0.38
33 2 0.04
35 25 0.53
36 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (31 bp):
CAAAGATATATTCCCTTTATCCAAGGCGACG
Found at i:7484 original size:53 final size:53
Alignment explanation
Indices: 7426--7528 Score: 206
Period size: 53 Copynumber: 1.9 Consensus size: 53
7416 GAACCTGGAC
7426 AAGGAATAACAATATAACAGCAAAGTACAATTGAAACAGGAACTCAATAGGAG
1 AAGGAATAACAATATAACAGCAAAGTACAATTGAAACAGGAACTCAATAGGAG
7479 AAGGAATAACAATATAACAGCAAAGTACAATTGAAACAGGAACTCAATAG
1 AAGGAATAACAATATAACAGCAAAGTACAATTGAAACAGGAACTCAATAG
7529 AGGACATCAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.53, C:0.14, G:0.17, T:0.16
Consensus pattern (53 bp):
AAGGAATAACAATATAACAGCAAAGTACAATTGAAACAGGAACTCAATAGGAG
Found at i:9178 original size:33 final size:33
Alignment explanation
Indices: 9136--9203 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
9126 AAATCATAGA
9136 TGTGAGGACCAAGCGAAGAAGCACCATGGAACC
1 TGTGAGGACCAAGCGAAGAAGCACCATGGAACC
9169 TGTGAGGACCAAGCGAAGAAGCACCATGGAACC
1 TGTGAGGACCAAGCGAAGAAGCACCATGGAACC
9202 TG
1 TG
9204 GGATCTCTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.35, C:0.24, G:0.31, T:0.10
Consensus pattern (33 bp):
TGTGAGGACCAAGCGAAGAAGCACCATGGAACC
Found at i:20028 original size:14 final size:14
Alignment explanation
Indices: 20009--20035 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
19999 TCCGTAGTTA
20009 AATATAGTTATGAG
1 AATATAGTTATGAG
20023 AATATAGTTATGA
1 AATATAGTTATGA
20036 TCGATCCGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.37
Consensus pattern (14 bp):
AATATAGTTATGAG
Found at i:22680 original size:2 final size:2
Alignment explanation
Indices: 22673--22699 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22663 AATATTTTTA
22673 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
22700 GTTTTAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:30378 original size:21 final size:21
Alignment explanation
Indices: 30354--30394 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
30344 TAATTTGTCA
30354 GAAATATCAAAATAAAAAGAC
1 GAAATATCAAAATAAAAAGAC
30375 GAAATATCAAAATAAAAAGA
1 GAAATATCAAAATAAAAAGA
30395 GGCATTAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.68, C:0.07, G:0.10, T:0.15
Consensus pattern (21 bp):
GAAATATCAAAATAAAAAGAC
Found at i:32067 original size:47 final size:47
Alignment explanation
Indices: 32012--32102 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
32002 GAAAGATAAG
32012 GAACTCTATAAAAATAAATATAAACGAACAAAGATAAATAATTTGAA
1 GAACTCTATAAAAATAAATATAAACGAACAAAGATAAATAATTTGAA
* *
32059 GAACTCTATAAAAATAAATATGAACGAATAAAGATAAATAATTT
1 GAACTCTATAAAAATAAATATAAACGAACAAAGATAAATAATTT
32103 AACCAATTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.58, C:0.08, G:0.09, T:0.25
Consensus pattern (47 bp):
GAACTCTATAAAAATAAATATAAACGAACAAAGATAAATAATTTGAA
Found at i:33584 original size:135 final size:135
Alignment explanation
Indices: 33408--33657 Score: 396
Period size: 134 Copynumber: 1.9 Consensus size: 135
33398 CAGTTTTTTG
* ** *
33408 TTTAGATTTAATCCTTTTATGACGGTAGATTATACAATTCGCTTGGAGATCTCATTTAACCTTGT
1 TTTAGATTTAATCCTTTTATGACGGTAGATTATAAAATTCGCAAGGAGATCTCATCTAACCTTG-
*
33473 TTTTTAGATGGAAATCAGCATGGATTACAAGCTGTTGAACTTTAATCTGTTAGGATGCTAAATTA
65 TTTTTAGATGGAAATCAGCATGGATTACAAGCTGTTGAACTTGAATCTGTTAGGATGCTAAATTA
33538 TAATCA
130 TAATCA
*
33544 TTTAGA-TTAAT-CTTTGTATGACGGTAGATTATAAAATTCGCAAGGAGATCTCATCTAACTTTG
1 TTTAGATTTAATCCTTT-TATGACGGTAGATTATAAAATTCGCAAGGAGATCTCATCTAACCTTG
* *
33607 TTTTTAGCTGGAAATTAGCATGGATTACAAGCTGTTGAACTTGAATCTGTT
65 TTTTTAGATGGAAATCAGCATGGATTACAAGCTGTTGAACTTGAATCTGTT
33658 TAACTTTTAT
Statistics
Matches: 105, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
134 52 0.50
135 47 0.45
136 6 0.06
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (135 bp):
TTTAGATTTAATCCTTTTATGACGGTAGATTATAAAATTCGCAAGGAGATCTCATCTAACCTTGT
TTTTAGATGGAAATCAGCATGGATTACAAGCTGTTGAACTTGAATCTGTTAGGATGCTAAATTAT
AATCA
Found at i:37315 original size:24 final size:24
Alignment explanation
Indices: 37283--37337 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
37273 ATTTTGTTGA
37283 AGTTGTAGTTGGAAAGCTAATCTT
1 AGTTGTAGTTGGAAAGCTAATCTT
37307 AGTTGTAGTTGGAAAGCTAATCTT
1 AGTTGTAGTTGGAAAGCTAATCTT
*
37331 GGTTGTA
1 AGTTGTA
37338 AGTTCAATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.38
Consensus pattern (24 bp):
AGTTGTAGTTGGAAAGCTAATCTT
Found at i:40179 original size:18 final size:18
Alignment explanation
Indices: 40158--40199 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
40148 GGCGGTCGGT
40158 GCGGCGGTGGTGTG-CGCG
1 GCGGCGGT-GTGTGCCGCG
*
40176 GCGGCCGTGTGTGCCGCG
1 GCGGCGGTGTGTGCCGCG
40194 GCGGCG
1 GCGGCG
40200 TTAGTGGTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.00, C:0.29, G:0.57, T:0.14
Consensus pattern (18 bp):
GCGGCGGTGTGTGCCGCG
Found at i:44979 original size:21 final size:21
Alignment explanation
Indices: 44935--44979 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
44925 AAATTACACA
*
44935 TTTAATACCTAAATTATTAGT
1 TTTAATACCTAAATTATTAAT
*
44956 TTTAATATCTAAACTT-TTAAT
1 TTTAATACCTAAA-TTATTAAT
44977 TTT
1 TTT
44980 TTTAAAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTAATACCTAAATTATTAAT
Found at i:47109 original size:22 final size:21
Alignment explanation
Indices: 47073--47117 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
47063 TTTTCTAAAA
47073 ATAAAAAAGTAATATATAATTT
1 ATAAAAAAGTAATAT-TAATTT
*
47095 ATAAAAATAGT-ATATTTATTT
1 ATAAAAA-AGTAATATTAATTT
47116 AT
1 AT
47118 TTAAGAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.33
22 11 0.52
23 3 0.14
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.42
Consensus pattern (21 bp):
ATAAAAAAGTAATATTAATTT
Found at i:47114 original size:140 final size:139
Alignment explanation
Indices: 46959--47332 Score: 619
Period size: 138 Copynumber: 2.7 Consensus size: 139
46949 TTATTTTTAT
* *
46959 AAATAGGATATTTATTTACTT-AGAAATATCAGAAAATGACTTCTAGGTGCTTTAAGACAGCCCA
1 AAATAGTATATTTATTTATTTAAG-AATATCAGAAAATGACTTCTAGGTGCTTTAAGACAGCCCA
*
47023 TTTCTTAATATTAAAAAATAAATAAATATTAATAAAATATTTTTCTAAAAATAAAAAAGTAATAT
65 TTTCTTAATATTAAAAAA-AAATAAATATTAATAAAACATTTTTCTAAAAATAAAAAAGTAATAT
47088 ATAATTTATAA
129 ATAATTTATAA
*
47099 AAATAGTATATTTATTTATTTAAGAATATCAGAACATGACTTCTAGGTGCTTTAAGACAGCCCAT
1 AAATAGTATATTTATTTATTTAAGAATATCAGAAAATGACTTCTAGGTGCTTTAAGACAGCCCAT
*
47164 TTCTTAATATT-AAAAAAAATAAATATTAATAAAACATTTTTCTAAAAATAAAAAATTAATATAT
66 TTCTTAATATTAAAAAAAAATAAATATTAATAAAACATTTTTCTAAAAATAAAAAAGTAATATAT
47228 AATTTATAA
131 AATTTATAA
* * *
47237 AAATAGTATATTTATTTATTTAAGAATATCAGAAAA-GAATTTCTAGATGCTTTAAGACAACCCA
1 AAATAGTATATTTATTTATTTAAGAATATCAGAAAATG-ACTTCTAGGTGCTTTAAGACAGCCCA
47301 TTTCTTAATATTAAAAAACAAATAAATATTAA
65 TTTCTTAATATTAAAAAA-AAATAAATATTAA
47333 AATATGATTA
Statistics
Matches: 221, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
137 1 0.00
138 125 0.57
139 10 0.05
140 83 0.38
141 2 0.01
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (139 bp):
AAATAGTATATTTATTTATTTAAGAATATCAGAAAATGACTTCTAGGTGCTTTAAGACAGCCCAT
TTCTTAATATTAAAAAAAAATAAATATTAATAAAACATTTTTCTAAAAATAAAAAAGTAATATAT
AATTTATAA
Found at i:47521 original size:20 final size:18
Alignment explanation
Indices: 47475--47524 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
47465 AATAATAATT
*
47475 AAATATATAAACATATAA
1 AAATAAATAAACATATAA
*
47493 AATATAAATAAACAATGATTA
1 AA-ATAAATAAAC-AT-ATAA
47514 AAATAAATAAA
1 AAATAAATAAA
47525 ATTTGTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 2 0.07
19 9 0.33
20 11 0.41
21 5 0.19
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (18 bp):
AAATAAATAAACATATAA
Found at i:47551 original size:18 final size:17
Alignment explanation
Indices: 47475--47553 Score: 59
Period size: 18 Copynumber: 4.2 Consensus size: 17
47465 AATAATAATT
* *
47475 AAATATATAAACATATAA
1 AAATAAATAAA-ATATTA
47493 AATATAAATAAACAATGATTA
1 AA-ATAAAT-AA-AAT-ATTA
*
47514 AAATAAATAAAATTTGTA
1 AAATAAATAAAATAT-TA
*
47532 AAATAAATGAAAGTATTA
1 AAATAAAT-AAAATATTA
47550 AAAT
1 AAAT
47554 TAGTGACTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
17 1 0.02
18 21 0.42
19 12 0.24
20 10 0.20
21 6 0.12
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (17 bp):
AAATAAATAAAATATTA
Found at i:48925 original size:3 final size:3
Alignment explanation
Indices: 48919--48969 Score: 54
Period size: 3 Copynumber: 18.0 Consensus size: 3
48909 ATTTATTATT
* * *
48919 TAA TAA TAA TAA TAA TAA T-A TAA TAA -AA CAA TAA -AA TAA TTA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
48964 TAA TAA
1 TAA TAA
48970 ATAGAAAACA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
2 6 0.15
3 34 0.85
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:50227 original size:21 final size:21
Alignment explanation
Indices: 50201--50240 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50191 CTATCCCTAA
*
50201 CTTAAACACTAAATTATAAAT
1 CTTAAACACTAAATCATAAAT
*
50222 CTTAAACCCTAAATCATAA
1 CTTAAACACTAAATCATAA
50241 CTCCATAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (21 bp):
CTTAAACACTAAATCATAAAT
Found at i:54508 original size:38 final size:38
Alignment explanation
Indices: 54457--54535 Score: 131
Period size: 38 Copynumber: 2.1 Consensus size: 38
54447 AATATACAAT
* *
54457 GAAAAAAATAATTAGGCAAGATAGGATAATCCCAGGAA
1 GAAAAAAATAATTAGGCAACATAGGATAATACCAGGAA
*
54495 GAAAAGAATAATTAGGCAACATAGGATAATACCAGGAA
1 GAAAAAAATAATTAGGCAACATAGGATAATACCAGGAA
54533 GAA
1 GAA
54536 GTTTATGAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.53, C:0.10, G:0.22, T:0.15
Consensus pattern (38 bp):
GAAAAAAATAATTAGGCAACATAGGATAATACCAGGAA
Found at i:61789 original size:23 final size:21
Alignment explanation
Indices: 61763--61810 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
61753 TTAAGTTTTG
61763 AAAAAATTGAAAGTTTAGGTAC
1 AAAAAATT-AAAGTTTAGGTAC
* *
61785 TAAAAACTTATAGTTTAGGTAC
1 -AAAAAATTAAAGTTTAGGTAC
61807 AAAA
1 AAAA
61811 TGTGTTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 4 0.17
22 12 0.52
23 7 0.30
ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29
Consensus pattern (21 bp):
AAAAAATTAAAGTTTAGGTAC
Found at i:79798 original size:6 final size:6
Alignment explanation
Indices: 79789--79921 Score: 266
Period size: 6 Copynumber: 22.2 Consensus size: 6
79779 CATTACCATT
79789 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
79837 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
79885 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG A
79922 GCCGAGACGG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 127 1.00
ACGTcount: A:0.34, C:0.50, G:0.17, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:81883 original size:19 final size:19
Alignment explanation
Indices: 81861--81898 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
81851 AAGAAATAAC
*
81861 AAAAAATATAGGTAAAATT
1 AAAAAATAGAGGTAAAATT
*
81880 AAAAAATAGAGGTAGAATT
1 AAAAAATAGAGGTAAAATT
81899 TTGAGGATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.24
Consensus pattern (19 bp):
AAAAAATAGAGGTAAAATT
Found at i:91031 original size:59 final size:61
Alignment explanation
Indices: 90920--91037 Score: 159
Period size: 59 Copynumber: 1.9 Consensus size: 61
90910 CCTGCAAACC
** * *
90920 CATGATAGTTCAAAATATCATGCTTGCTAAGTATCATCTACGCTTAAGTCAAGTAAATAAAAT
1 CATGATAGTAAAAAATATCATGCTGGCTAAG--TCATCTACGCTCAAGTCAAGTAAATAAAAT
*
90983 CATGATAGTAAAAAAT-TCATGCTGGCTAAG-CATCTATGCTCAAGTCAAGTAAATA
1 CATGATAGTAAAAAATATCATGCTGGCTAAGTCATCTACGCTCAAGTCAAGTAAATA
91038 TTCTTTTAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
59 23 0.46
62 13 0.26
63 14 0.28
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (61 bp):
CATGATAGTAAAAAATATCATGCTGGCTAAGTCATCTACGCTCAAGTCAAGTAAATAAAAT
Found at i:93029 original size:15 final size:15
Alignment explanation
Indices: 92992--93030 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
92982 TAAGAATAAA
*
92992 GAAACAAAAGGTATG
1 GAAACAATAGGTATG
93007 GAAACAATAGGTATG
1 GAAACAATAGGTATG
93022 GAAACAATA
1 GAAACAATA
93031 CCGGTTGTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.54, C:0.08, G:0.23, T:0.15
Consensus pattern (15 bp):
GAAACAATAGGTATG
Found at i:96368 original size:16 final size:15
Alignment explanation
Indices: 96327--96374 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
96317 TAGAGCTTCC
*
96327 TTTTATTTT-TTAGA
1 TTTTATTTTATTATA
96341 TTGTTATTTTATTATA
1 TT-TTATTTTATTATA
96357 TTTTATTTTTATT-TA
1 TTTTA-TTTTATTATA
96372 TTT
1 TTT
96375 AAAAAGGTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 2 0.07
15 15 0.50
16 13 0.43
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (15 bp):
TTTTATTTTATTATA
Found at i:101681 original size:174 final size:177
Alignment explanation
Indices: 101390--101728 Score: 542
Period size: 174 Copynumber: 1.9 Consensus size: 177
101380 AACATTAGGA
* *
101390 CCCTTGAATTATGGAAGTCAGGCGAAGCAGAAAACCCAGTTGCAAATGATCCTGCAGTTGCTAAA
1 CCCTTGAATTATGGAAGTCAGACGAAGCAGAAAACCCAGTTGCAAATGATCCTGCAGTTGCCAAA
*
101455 GATACTATGGTATTTTTATTTTTATGATTATGCTCATGGATCGAATACAGTCTAGCATTCCAGTT
66 GACAC-ATGGTATTTTTATTTTTATGATTATGCTCATGGATCGAATACAGTCTAGCATTCCAGTT
101520 ACTGTC-T-TA-CTTTTCACTGAGGATGCATCTACACACACACACACT
130 ACTGTCTTATACCTTTTCACTGAGGATGCATCTACACACACACACACT
* ** *
101565 CCCTTGAATTCTGGAAGTCAGACGAAGCAGAAAAATTCTGTTGCAAATGATCCTGCAGTTGCCAA
1 CCCTTGAATTATGGAAGTCAGACGAAGCAG-AAAACCCAGTTGCAAATGATCCTGCAGTTGCCAA
*
101630 AGACAC-TGGTATTTTTATTTTTATGATTATGCTCATGGATCGAGTACAGTCTAGCATTCCAGTT
65 AGACACATGGTATTTTTATTTTTATGATTATGCTCATGGATCGAATACAGTCTAGCATTCCAGTT
*
101694 ACTGTCTTACTACCTTTTCATTGAGGATGCATCTA
130 ACTGTCTTA-TACCTTTTCACTGAGGATGCATCTA
101729 TATACTCACA
Statistics
Matches: 150, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
174 63 0.42
175 29 0.19
176 35 0.23
177 2 0.01
178 21 0.14
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (177 bp):
CCCTTGAATTATGGAAGTCAGACGAAGCAGAAAACCCAGTTGCAAATGATCCTGCAGTTGCCAAA
GACACATGGTATTTTTATTTTTATGATTATGCTCATGGATCGAATACAGTCTAGCATTCCAGTTA
CTGTCTTATACCTTTTCACTGAGGATGCATCTACACACACACACACT
Done.