genome.fa.s1797.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001797.1 Hibiscus syriacus cultivar Beakdansim tig00003632_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157587

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8485--8581	6	16.2	6	97	0	167	47	16	3	32	1.62
12283--12307	12	2.1	12	100	0	50	48	0	0	52	1.00
19391--19425	18	1.9	18	88	0	52	48	0	0	51	1.00
22482--22538	22	2.6	22	91	0	87	45	19	19	15	1.85
24145--24840	106	6.5	106	94	0	1194	21	18	24	34	1.96
25351--25386	17	2.0	19	89	10	58	44	30	5	19	1.73
26497--26567	8	9.1	7	77	17	61	0	15	7	77	0.97
26491--26546	16	3.4	17	78	4	53	0	16	8	75	1.05
26522--26573	16	3.2	16	79	12	54	0	13	7	78	0.94
28450--28483	5	6.8	5	100	0	68	82	0	0	17	0.67
29749--29805	22	2.6	22	91	0	87	43	17	21	17	1.88
31788--31855	31	2.2	31	84	5	84	27	11	14	45	1.80
31806--31874	31	2.2	31	87	5	95	23	14	18	43	1.87
33034--33079	24	2.0	23	91	4	74	30	2	10	56	1.46
33036--33085	24	2.2	24	82	7	59	36	2	12	50	1.51
37499--37654	80	2.0	80	79	5	172	52	9	7	30	1.61
38004--38069	31	2.1	31	88	5	98	46	7	3	42	1.47
42097--42137	8	5.2	8	82	5	57	34	0	29	36	1.58
42208--42964	128	5.9	128	96	0	1399	22	25	19	31	1.98
43365--43464	33	3.0	34	83	2	139	39	0	4	57	1.18
43975--44047	21	3.5	21	85	7	103	21	26	34	17	1.96
44051--44098	21	2.3	21	85	0	60	22	12	39	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45825--45913	31	2.7	31	79	6	88	58	2	0	39	1.11
45859--45934	33	2.3	34	84	8	95	64	5	0	30	1.15
54137--54214	12	7.3	11	81	9	74	48	2	0	48	1.15
54142--54202	2	31.5	2	86	6	90	49	1	0	49	1.10
56192--57571	471	2.9	470	90	3	2041	26	24	23	25	2.00
58896--58975	42	1.9	42	100	0	160	38	18	13	28	1.89
61748--61782	18	1.9	18	100	0	70	20	5	34	40	1.76
61750--61790	18	2.3	18	87	4	57	19	4	43	31	1.72
63886--63939	20	2.7	20	88	8	74	25	16	25	31	1.97
68041--68078	7	5.4	7	90	0	58	15	28	13	42	1.85
71827--71883	26	2.2	25	79	11	62	15	17	8	57	1.63
73628--74920	106	12.4	105	92	2	2041	33	26	18	22	1.97
73628--74920	521	2.5	523	94	1	2239	33	26	18	22	1.97
84602--84653	25	2.1	25	92	0	86	26	15	30	26	1.96
96138--96167	6	5.0	6	100	0	60	16	16	0	66	1.25
99621--99713	29	3.2	29	71	17	75	39	3	22	34	1.70
104661--104692	12	2.7	12	100	0	64	31	18	0	50	1.48
117639--117683	14	2.8	17	74	19	51	64	2	0	33	1.06
120762--120836	29	2.5	30	86	4	125	20	37	29	13	1.90
120883--120960	20	3.9	20	96	0	138	26	35	25	11	1.90
120884--120960	10	7.7	10	76	16	79	27	36	24	11	1.90
121007--121073	33	2.1	32	91	5	109	8	38	25	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121019--121089	33	2.2	33	86	0	97	11	36	26	25	1.90
121080--121112	14	2.4	14	94	0	57	12	27	39	21	1.88
125784--125838	23	2.3	23	87	3	74	14	12	16	56	1.68
132025--132089	31	2.0	34	82	8	82	49	3	13	33	1.58
134915--134963	13	3.5	13	86	10	62	38	0	2	59	1.09
135375--135590	108	2.0	109	99	0	425	36	14	10	38	1.80

Tables:   1

The End!