Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001798.1 Hibiscus syriacus cultivar Beakdansim tig00003637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120014

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7481--7519
18
2.2
18
100
0
78
33
7
28
30
1.85
14813--14875
25
2.7
22
72
13
54
52
1
0
46
1.10
28515--28680
60
2.8
60
80
9
162
41
7
19
31
1.79
34730--34803
37
2.0
38
92
5
125
44
20
5
29
1.73
35407--36443
519
2.0
519
98
0
2002
25
23
18
32
1.97
38616--38647
15
2.1
15
94
0
55
6
25
15
53
1.65
39841--39941
35
2.8
35
89
4
150
45
18
5
29
1.73
48220--48272
20
2.7
20
77
11
63
41
20
16
20
1.90
48336--48379
20
2.2
20
87
0
61
20
20
13
45
1.85
49272--49309
20
1.9
20
100
0
76
23
13
26
36
1.91
49300--49351
20
2.6
20
78
0
59
23
5
32
38
1.78
62816--62849
16
2.1
16
94
0
59
32
8
26
32
1.87
63600--63631
15
2.1
16
94
5
57
50
18
25
6
1.70
69794--69844
27
2.0
25
84
7
66
64
1
0
33
1.05
72672--72727
28
2.0
28
89
3
85
39
1
3
55
1.28
75905--75941
2
18.5
2
100
0
74
51
0
0
48
1.00
76079--76117
2
20.0
2
94
5
71
48
0
0
51
1.00
76219--76245
14
1.9
14
100
0
54
59
3
7
29
1.42
76240--76303
25
2.5
26
85
5
87
67
3
7
21
1.31
76269--76334
33
2.0
33
91
5
107
66
4
9
19
1.37
77343--77696
45
7.8
45
90
1
494
32
19
23
24
1.97
77651--78221
73
7.8
73
95
2
1013
31
21
20
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78168--78315
47
3.1
47
95
0
260
29
19
19
31
1.97
78261--78670
73
5.6
73
92
1
667
31
20
20
27
1.97
78261--78670
149
2.8
148
91
1
664
31
20
20
27
1.97
77799--78669
462
1.9
462
95
0
1582
31
21
19
27
1.97
89308--89372
24
2.8
24
74
4
62
69
3
6
21
1.25
89349--89420
14
5.2
13
75
15
56
66
2
5
25
1.27
89389--89452
26
2.6
25
78
11
69
65
1
9
23
1.30
89366--89452
25
3.5
26
75
7
74
64
2
8
25
1.33
89418--89483
33
2.0
33
88
5
98
65
4
10
19
1.41
90759--90837
21
4.0
21
71
23
64
64
2
0
32
1.07
90759--90810
9
6.1
9
76
13
56
63
1
0
34
1.06
90756--90808
16
3.2
17
84
10
65
66
1
0
32
1.03
90762--90811
17
3.0
17
91
2
75
60
4
0
36
1.16
91082--91116
14
2.5
14
95
0
61
14
25
51
8
1.70
91969--92009
2
20.5
2
89
0
64
56
43
0
0
0.99
111732--111797
27
2.4
27
100
0
132
42
36
9
12
1.74
112174--112225
25
2.1
25
96
0
95
40
21
9
28
1.84

Tables:   1

The End!