Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001799.1 Hibiscus syriacus cultivar Beakdansim tig00003638_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49250

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1450--1477
2
14.0
2
100
0
56
50
0
0
50
1.00
4646--4678
2
16.5
2
100
0
66
48
0
0
51
1.00
5550--5820
84
3.2
84
96
0
497
31
5
10
53
1.57
17261--17300
17
2.4
17
91
0
62
40
15
20
25
1.90
19557--19645
34
2.7
32
77
10
90
39
0
2
58
1.11
21724--21761
13
3.0
13
88
3
60
44
0
0
55
0.99
21775--21832
22
2.7
22
94
2
100
43
12
3
41
1.59
24668--24742
21
3.6
21
98
0
141
25
22
16
36
1.94
25837--25869
14
2.4
14
100
0
66
36
24
12
27
1.91
27264--27379
31
3.7
31
81
2
135
32
18
18
30
1.95
29837--29894
22
2.6
22
77
2
62
41
15
5
37
1.70
30038--31018
489
2.0
491
91
1
1601
29
13
10
46
1.77
33279--33336
21
2.9
21
82
14
61
67
0
1
31
1.01
33291--33344
22
2.7
20
81
18
67
68
0
1
29
1.00
33373--33421
19
2.6
19
93
3
82
71
4
2
22
1.13
34065--34228
76
2.2
76
87
3
233
56
10
3
29
1.49
35852--35881
15
2.0
15
93
0
51
6
16
13
63
1.50
36094--36133
19
2.1
19
86
9
55
82
2
2
12
0.87
41747--41792
17
2.8
16
86
6
65
71
2
0
26
0.97
42419--42557
74
1.9
72
89
5
217
57
10
2
29
1.44
42799--42865
34
2.0
34
84
0
89
32
19
20
26
1.97
43425--43498
38
2.0
35
92
7
121
41
9
9
39
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43738--43777
20
2.0
20
85
0
53
30
22
15
32
1.94
45786--45831
24
1.9
24
100
0
92
28
6
4
60
1.40
47027--47087
22
2.7
22
80
7
61
45
13
8
32
1.72

Tables:   1

The End!