genome.fa.s18.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000018.1 Hibiscus syriacus cultivar Beakdansim tig00000034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70004

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4024--4069	20	2.3	20	96	0	83	47	4	15	32	1.65
4728--4785	21	2.6	22	75	22	59	22	15	31	31	1.95
24826--24917	15	6.1	15	67	16	57	46	1	9	42	1.44
24828--24921	30	3.1	30	85	1	125	47	1	9	41	1.43
24817--24919	14	6.9	15	68	14	61	47	0	9	41	1.43
25203--25246	19	2.3	19	84	7	54	52	2	2	43	1.26
25211--25249	19	2.1	18	90	4	60	53	0	2	43	1.14
25212--25345	54	2.5	52	77	12	146	47	0	2	49	1.19
25812--26180	20	18.5	20	85	4	449	34	26	18	20	1.95
26866--26912	24	2.0	24	87	8	69	25	14	21	38	1.92
27087--27111	12	2.1	12	100	0	50	72	0	28	0	0.86
29386--29673	19	16.4	19	78	17	329	46	18	21	13	1.82
29386--29654	33	7.8	33	78	14	260	46	18	21	13	1.82
29414--29654	52	4.6	52	91	3	362	46	17	22	13	1.82
29389--29673	71	4.1	69	82	12	293	46	18	21	12	1.83
29386--29695	52	5.9	49	88	7	298	46	18	21	13	1.83
29702--29803	19	5.6	19	82	12	142	14	22	17	45	1.85
29910--29946	14	2.6	14	91	0	65	45	21	0	32	1.52
31897--31988	32	2.8	33	91	3	159	46	21	20	10	1.81
31916--31971	14	3.7	14	76	17	58	44	23	21	10	1.83
31860--31988	19	7.3	19	75	19	118	46	24	18	10	1.81
31992--32080	33	2.7	33	92	3	144	7	17	28	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31992--32117	19	7.1	19	74	17	119	8	16	28	46	1.77
32161--32817	93	7.1	93	98	1	1284	46	18	12	21	1.83
32161--32817	185	3.5	186	98	1	1284	46	18	12	21	1.83
32161--32817	277	2.4	278	99	0	1298	46	18	12	21	1.83
34524--34613	14	5.7	14	74	23	81	42	23	25	8	1.83
34516--34630	33	3.5	33	95	0	212	45	20	24	9	1.81
34523--34635	19	6.8	18	72	23	88	43	22	24	9	1.83
34647--34701	14	3.6	14	73	21	56	9	25	23	41	1.83
34631--34701	33	2.2	33	94	0	124	8	22	25	43	1.81
34642--34723	33	2.5	33	89	2	119	9	25	21	42	1.84
34654--34742	20	4.8	20	72	19	75	12	24	19	43	1.85
34822--34892	33	2.2	33	92	0	115	47	18	22	11	1.80
35073--35127	22	2.5	22	81	0	74	20	16	40	23	1.91
35273--35465	20	9.6	20	82	5	219	19	19	25	35	1.95
35273--35465	60	3.2	60	83	0	251	19	19	25	35	1.95
35521--35572	20	2.6	20	96	0	95	21	13	26	38	1.90
35815--35846	15	2.1	15	94	0	55	53	6	0	40	1.26
35859--35905	24	2.0	24	100	0	94	34	17	14	34	1.90
35885--35966	41	2.0	41	92	0	137	39	10	29	20	1.87
36071--36137	31	2.2	31	86	0	89	29	7	7	55	1.55
38328--38367	18	2.3	17	84	16	55	57	7	0	35	1.27
42270--42524	43	5.9	43	91	0	402	17	23	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43486--43522	19	2.0	20	89	10	60	54	2	8	35	1.44
48003--48118	59	2.0	59	84	3	153	50	9	6	34	1.60
51261--51345	42	2.0	42	90	0	134	32	10	8	48	1.67
52472--52556	44	1.9	44	85	4	118	20	10	22	47	1.80
56247--56317	23	3.0	23	79	2	79	23	12	5	57	1.56
59927--60014	34	2.6	34	81	5	97	25	22	15	36	1.94
61326--61369	23	1.9	23	90	0	70	29	6	54	9	1.58

Tables:   1

The End!