genome.fa.s180.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000180.1 Hibiscus syriacus cultivar Beakdansim tig00000315_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84966

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8030--8063	17	1.9	18	88	5	52	29	0	5	64	1.17
17274--17347	32	2.3	33	81	6	89	47	5	0	47	1.25
22976--23013	17	2.2	17	95	0	67	47	26	0	26	1.52
23249--23281	9	3.3	10	91	8	50	33	0	0	66	0.92
25065--25119	20	3.0	17	75	17	56	36	1	0	61	1.06
28217--28843	194	3.2	193	89	2	954	40	12	14	32	1.84
28126--28843	388	1.8	388	86	4	1045	40	12	14	31	1.84
30121--30221	37	2.8	36	86	6	123	38	14	15	30	1.88
30630--30713	11	7.3	11	71	19	55	34	3	2	59	1.28
30662--30704	15	2.7	15	78	7	50	37	2	0	60	1.10
30876--30924	19	2.7	18	84	6	62	32	4	0	63	1.13
34196--34263	8	8.0	8	71	12	55	77	7	14	0	0.96
34908--34956	22	2.2	22	92	0	80	32	24	14	28	1.94
35808--35910	35	2.9	35	87	5	143	23	24	12	39	1.89
35808--35908	37	2.8	36	89	3	141	22	23	12	40	1.89
35941--36011	37	1.9	37	88	0	106	23	21	12	42	1.87
35826--36214	102	3.9	102	93	2	626	28	21	12	37	1.90
36027--36113	37	2.4	37	86	5	115	25	21	13	39	1.90
36128--36197	36	1.9	36	82	0	86	27	22	12	37	1.91
36821--37285	106	4.4	109	84	5	551	32	26	19	21	1.97
36821--37283	107	4.4	108	83	7	545	32	25	19	21	1.97
36919--37443	100	5.0	102	79	10	402	32	24	20	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36821--37443	106	5.9	105	80	8	504	32	25	19	22	1.98
37903--38001	35	2.8	36	84	6	112	38	15	16	30	1.89
38439--38479	20	1.9	20	85	14	55	36	4	0	58	1.20
38636--38674	16	2.4	16	86	4	51	33	5	0	61	1.18
38650--38698	20	2.4	20	79	3	53	26	4	2	67	1.19
39692--40052	198	1.8	197	98	1	697	36	13	25	24	1.92
45624--45728	53	2.0	53	96	0	192	32	16	20	31	1.94
51645--51695	20	2.5	20	93	0	84	33	15	9	41	1.80
52202--52240	17	2.3	17	95	0	69	33	0	28	38	1.57
53716--53745	13	2.3	13	94	0	51	70	23	0	6	1.11
54010--54052	21	2.1	21	91	4	70	55	13	16	13	1.69
60206--60272	33	2.0	33	82	0	80	14	10	17	56	1.66
60260--60306	24	2.0	24	86	0	67	17	19	10	53	1.72
62263--62327	30	2.2	30	88	0	94	35	23	23	18	1.96
69389--69423	16	2.2	16	89	0	52	42	14	2	40	1.60
74574--74683	21	5.2	21	87	4	150	29	25	21	23	1.99
75131--75162	6	5.7	6	96	3	50	0	18	53	28	1.45
75247--75470	42	5.3	42	93	0	385	34	22	20	21	1.96
76323--76461	60	2.3	60	84	7	167	33	24	5	35	1.79
76613--76765	60	2.6	60	80	5	175	41	5	21	30	1.77
77773--77821	24	2.0	25	84	11	66	38	10	0	51	1.36
80243--80484	118	2.1	118	100	0	484	47	4	12	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80539--80626	20	4.4	19	70	20	54	51	2	2	44	1.26
80534--80620	31	2.8	31	77	10	88	52	2	2	42	1.26
80553--80602	19	2.4	21	77	12	59	48	2	4	46	1.32
83864--83972	41	2.6	42	77	13	116	47	1	7	43	1.42
83892--83970	42	1.9	41	87	7	115	44	2	7	45	1.45
83957--84082	34	3.9	33	75	15	113	47	2	11	38	1.53
83936--84129	65	2.9	66	83	9	232	47	3	10	38	1.54

Tables:   1

The End!