Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001800.1 Hibiscus syriacus cultivar Beakdansim tig00003639_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88674

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3506--3545
21
1.9
21
89
0
62
10
25
40
25
1.86
3528--3586
20
2.8
21
79
10
66
18
25
37
18
1.94
3527--3577
23
2.3
23
83
6
70
19
21
43
15
1.88
14191--14230
18
2.2
18
86
8
55
40
2
0
57
1.12
14472--14649
60
3.0
60
80
4
191
32
23
6
38
1.80
17087--17136
23
2.2
23
85
0
64
46
26
6
22
1.74
17153--17191
21
2.0
21
85
10
55
53
7
7
30
1.57
23365--23405
20
2.0
20
90
0
64
26
9
31
31
1.89
25703--25739
19
1.9
19
94
0
65
32
29
16
21
1.95
25825--25958
20
6.7
20
79
5
153
31
27
17
23
1.97
25765--25978
81
2.6
81
85
1
250
33
23
17
25
1.96
25829--25979
81
1.9
81
94
0
266
34
25
16
23
1.95
25975--26021
21
2.2
21
92
0
76
21
21
29
27
1.98
26118--26181
6
11.2
6
95
5
107
32
50
17
0
1.46
26178--26211
5
6.8
5
93
0
50
35
20
44
0
1.52
26491--26581
19
4.4
20
79
17
114
32
27
4
35
1.77
26491--26583
44
2.2
41
87
9
127
34
26
4
34
1.76
30192--30247
19
3.1
19
89
5
89
35
0
16
48
1.46
30315--30354
19
2.1
19
86
9
55
30
2
2
65
1.19
30508--30588
27
2.8
28
80
10
74
61
3
0
34
1.14
34108--34178
29
2.5
27
84
9
79
64
1
1
32
1.11
35056--35153
41
2.4
41
89
1
153
37
22
3
36
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36231--36273
9
4.4
9
78
16
50
20
9
16
53
1.70
37050--37092
14
2.8
16
83
16
56
44
9
0
46
1.35
37049--37127
41
2.0
40
85
7
106
44
11
1
43
1.48
37118--37169
27
1.9
27
84
0
68
48
19
3
28
1.66
38696--38725
15
2.0
15
100
0
60
33
26
13
26
1.93
42235--42298
30
2.1
30
85
0
83
18
9
7
64
1.47
45588--45628
14
2.8
14
85
10
55
80
2
14
2
0.92
45604--45646
17
2.6
17
88
3
61
74
4
18
2
1.10
47308--47501
64
3.0
64
96
0
352
34
23
13
28
1.92
47566--47755
90
2.1
90
89
3
285
31
27
14
26
1.95
47997--48297
129
2.3
129
86
1
415
25
31
16
26
1.97
51249--51288
14
2.7
14
92
7
62
45
0
0
55
0.99
54423--54469
2
24.0
2
83
12
62
48
4
0
46
1.21
54674--54730
25
2.3
25
75
6
62
35
17
10
36
1.84
59231--59361
65
2.0
66
89
5
203
41
7
20
30
1.80
59330--59388
28
2.1
29
93
3
102
49
6
23
20
1.73
60592--61065
182
2.6
181
85
2
646
43
12
16
27
1.84
60995--61037
20
2.3
19
88
11
63
51
11
16
20
1.75
62805--62844
20
2.0
21
85
14
57
42
5
7
45
1.54
64498--64709
117
1.8
117
80
8
261
51
7
16
25
1.70
65250--65289
20
2.0
21
85
14
57
37
15
5
42
1.68
65239--65293
21
2.7
20
80
11
58
40
12
3
43
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68621--68716
44
2.2
44
79
9
106
28
23
19
28
1.99
69960--69999
20
2.0
21
85
14
57
42
5
7
45
1.54
70975--71876
182
5.0
182
94
1
1553
41
12
17
28
1.86
72012--72174
87
1.9
87
94
0
290
33
13
10
42
1.78
73525--73636
37
3.0
37
93
0
188
41
12
12
33
1.81
76122--76323
103
2.0
103
87
0
296
41
23
12
22
1.88
79198--79279
29
2.8
29
78
10
87
35
19
2
42
1.65
83905--83937
16
1.9
18
88
11
52
57
18
0
24
1.40
86741--86848
37
2.9
37
82
6
130
40
1
8
49
1.44

Tables:   1

The End!