genome.fa.s1803.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001803.1 Hibiscus syriacus cultivar Beakdansim tig00003645_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54845

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11763--11860	22	4.2	23	71	17	69	76	1	5	17	1.02
11759--11862	37	2.8	36	78	8	102	75	0	5	17	1.04
12935--13029	39	2.6	36	85	9	129	26	8	24	41	1.83
13016--13131	36	3.2	36	83	9	146	42	14	18	24	1.88
13146--13244	36	2.7	37	82	3	128	40	11	21	27	1.87
13323--13399	36	2.1	37	82	2	93	45	12	19	22	1.84
13290--13633	102	3.3	101	85	5	429	37	12	19	30	1.89
13415--13501	37	2.4	36	86	1	111	40	14	19	25	1.90
13516--13571	22	2.5	22	94	0	103	35	14	23	26	1.93
13339--13656	108	3.0	108	86	5	418	37	12	18	31	1.88
13539--13720	87	2.1	87	94	0	319	35	11	18	35	1.87
13943--14128	93	2.0	93	92	0	309	27	16	22	32	1.96
14714--14790	32	2.4	32	84	4	93	40	23	7	28	1.82
14735--14802	32	2.1	32	91	5	111	39	20	10	29	1.86
15215--15363	65	2.3	64	86	6	196	32	18	20	27	1.96
15945--16001	27	2.1	27	80	6	62	56	14	3	26	1.54
17984--18062	23	3.5	23	76	10	92	25	22	26	25	2.00
23277--23452	65	2.7	64	83	6	212	29	17	24	28	1.97
23409--23448	18	2.3	18	86	4	55	32	17	25	25	1.97
29624--29662	19	2.0	19	85	14	53	66	0	7	25	1.18
29685--29726	17	2.4	18	88	4	59	71	0	9	19	1.13
29712--29740	13	2.3	13	94	5	51	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32479--32511	14	2.5	13	90	9	50	69	6	3	21	1.24
46784--46836	23	2.6	21	80	16	58	62	0	11	26	1.29
46784--46843	20	2.8	20	76	16	59	60	0	13	26	1.34
48071--48109	17	2.2	18	86	4	53	69	2	7	20	1.26
50873--50921	5	9.8	5	80	8	55	79	14	2	4	0.97
50858--50921	20	3.2	19	82	10	67	78	10	3	7	1.07
50869--50922	21	2.7	20	86	11	74	79	12	1	5	0.98

Tables:   1

The End!