Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001805.1 Hibiscus syriacus cultivar Beakdansim tig00003649_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71895

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1658--1690
14
2.4
14
94
0
57
33
6
30
30
1.82
3352--3529
90
2.0
90
93
0
302
46
6
10
36
1.65
10223--10490
90
3.0
90
93
0
446
45
6
10
37
1.64
13579--13635
30
1.9
30
88
0
87
31
26
15
26
1.96
14281--14346
20
3.6
19
70
19
59
21
19
22
36
1.95
22913--23053
64
2.2
63
86
5
185
36
18
19
26
1.94
23391--23425
18
1.9
18
88
0
52
31
5
17
45
1.71
24410--24711
149
2.0
147
97
1
568
28
15
20
35
1.94
28436--28470
18
1.9
18
88
0
52
31
5
17
45
1.71
29457--29759
147
2.0
148
98
1
581
27
15
21
35
1.94
29737--29782
23
2.0
23
91
0
74
21
23
26
28
1.99
30888--30912
7
3.6
7
100
0
50
68
0
0
32
0.90
34839--34892
23
2.2
25
81
12
69
22
9
9
59
1.57
39524--39551
2
14.0
2
100
0
56
50
0
0
50
1.00
40030--40084
20
2.6
21
83
11
60
29
16
21
32
1.95
48404--48441
18
2.1
19
90
5
60
23
7
5
63
1.42
59414--59488
21
3.5
20
76
20
71
41
21
10
26
1.86
60598--60641
17
2.6
17
85
7
63
86
2
11
0
0.66
60598--60646
23
2.0
23
88
7
71
83
2
14
0
0.73
60605--60643
14
2.9
13
85
7
51
84
2
12
0
0.72
63945--64286
137
2.5
135
79
5
316
35
22
16
24
1.95
64626--64674
23
2.3
23
86
10
68
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71446--71477
3
11.3
3
87
12
50
65
0
0
34
0.93
71447--71477
11
2.8
11
95
0
53
67
0
0
32
0.91
71446--71477
14
2.3
14
94
0
55
65
0
0
34
0.93
71703--71728
13
2.0
13
100
0
52
38
30
7
23
1.83

Tables:   1

The End!