genome.fa.s1806.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001806.1 Hibiscus syriacus cultivar Beakdansim tig00003650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77969

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1069--1107	2	20.5	2	84	10	55	46	0	0	53	1.00
1069--1107	17	2.3	17	90	0	60	46	0	0	53	1.00
1069--1108	15	2.7	15	92	0	62	45	0	0	55	0.99
2017--2043	2	13.5	2	100	0	54	48	0	0	51	1.00
913--2752	934	2.0	931	87	6	2447	35	18	8	37	1.82
4272--4466	59	3.3	59	77	5	191	37	17	10	33	1.84
4272--4492	59	3.8	59	75	8	141	35	19	10	33	1.87
4544--4686	45	3.5	43	74	21	144	30	25	10	34	1.89
4578--4797	33	5.9	34	68	23	122	28	24	12	35	1.91
4533--4851	78	4.1	78	88	1	451	27	23	11	36	1.90
5353--5396	17	2.6	18	89	7	65	34	20	15	29	1.94
6132--6404	54	5.1	54	92	0	429	37	16	13	32	1.87
12938--13223	54	5.3	53	84	5	283	38	16	12	33	1.86
12983--13238	54	4.7	54	91	1	390	37	15	13	33	1.86
28561--28630	23	3.0	23	82	0	86	30	17	22	30	1.97
40550--40583	16	2.2	15	94	5	59	47	23	5	23	1.73
54981--55022	20	2.0	21	95	4	77	21	19	21	38	1.94
56816--56941	61	2.1	61	86	0	171	26	30	17	25	1.97
61600--61752	81	1.9	81	82	2	191	28	19	9	41	1.83
62192--62699	170	3.0	170	85	4	650	35	20	12	32	1.89
62170--62711	58	9.5	58	83	6	635	35	19	12	33	1.89
67843--68404	114	4.8	116	85	6	664	35	19	11	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67843--68392	172	3.2	172	84	6	682	35	19	12	33	1.89
67843--68404	58	9.7	59	84	6	704	35	19	11	33	1.88
71625--71759	61	2.1	64	86	5	186	27	28	16	28	1.97
71914--71956	22	2.0	22	90	0	68	39	11	6	41	1.68
77033--77070	19	2.0	19	89	0	58	13	15	0	71	1.16

Tables:   1

The End!