Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001807.1 Hibiscus syriacus cultivar Beakdansim tig00003651_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96071

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
385--417
2
16.5
2
100
0
66
51
0
0
48
1.00
1481--1506
3
8.7
3
100
0
52
65
0
0
34
0.93
1564--1609
24
1.9
24
86
0
65
52
4
0
43
1.21
1986--2821
84
9.9
84
87
4
1082
25
19
20
34
1.96
3259--3304
16
2.9
16
96
0
83
50
6
13
30
1.66
4570--4605
12
2.8
13
91
8
65
36
5
8
50
1.56
6392--6432
19
2.1
20
86
4
57
68
14
0
17
1.22
6833--6883
23
2.3
22
86
6
77
35
19
19
25
1.95
8882--8906
12
2.1
12
100
0
50
24
32
16
28
1.96
13588--13773
99
1.9
99
90
2
302
27
17
18
36
1.93
18250--18292
17
2.7
16
82
7
52
58
4
9
27
1.49
19326--19367
22
1.9
22
85
9
59
54
4
0
40
1.21
19316--19367
20
2.4
22
81
12
63
50
3
3
42
1.39
20341--20372
12
2.8
11
90
9
55
28
25
9
37
1.87
22110--22159
19
2.6
19
78
12
57
20
26
20
34
1.96
37161--37188
11
2.5
11
100
0
56
78
7
14
0
0.95
38508--39137
54
11.9
54
81
7
550
32
18
26
22
1.97
38508--39137
156
4.0
156
84
7
793
32
18
26
22
1.97
38484--39146
108
6.2
108
81
6
734
32
19
26
22
1.97
39157--39232
38
2.0
38
97
0
143
35
13
22
28
1.92
39124--39399
110
2.8
98
86
10
357
34
14
21
28
1.93
39195--39475
55
5.1
55
90
1
429
34
14
21
28
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42537--42582
19
2.4
19
85
7
58
23
28
15
32
1.95
46312--46669
49
7.3
49
78
2
358
32
13
24
29
1.94
46299--46669
99
3.8
98
84
1
436
32
14
23
29
1.94
50681--50764
37
2.4
37
86
6
120
38
11
16
33
1.86
54362--54425
33
1.9
33
84
9
85
68
3
15
12
1.32
57961--58045
41
2.1
41
88
0
125
62
7
17
12
1.52
59572--59622
16
3.4
16
75
25
58
31
1
0
66
1.03
59572--59611
12
3.4
13
80
19
52
35
0
0
65
0.93
72718--73137
49
8.6
49
86
2
553
35
12
22
29
1.91
72718--73137
97
4.3
98
85
4
539
35
12
22
29
1.91
72718--73137
146
2.9
145
88
2
576
35
12
22
29
1.91
80874--81528
49
13.4
49
85
4
727
34
13
21
31
1.91
88771--88796
5
5.2
5
100
0
52
0
42
0
57
0.98
92729--93017
104
2.8
104
81
3
305
34
15
22
27
1.94

Tables:   1

The End!