genome.fa.s1808.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001808.1 Hibiscus syriacus cultivar Beakdansim tig00003653_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63506

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1917--1959	21	2.0	21	81	0	50	30	25	27	16	1.97
1988--2032	22	2.0	22	91	4	72	28	33	26	11	1.91
3298--3611	103	3.1	103	93	0	533	27	13	22	36	1.92
3628--3695	23	3.0	23	89	4	93	20	25	26	27	1.99
9249--9370	43	2.9	43	83	1	156	30	13	18	37	1.89
9289--9389	42	2.4	43	83	3	123	31	17	16	33	1.93
15476--15524	20	2.5	20	100	0	98	71	6	8	14	1.29
16275--16325	15	3.3	15	84	10	59	27	0	5	66	1.14
17778--17857	15	5.3	15	100	0	160	27	33	25	13	1.93
23361--23396	16	2.2	16	100	0	72	33	19	36	11	1.87
24241--24278	17	2.2	18	90	4	60	65	0	0	34	0.93
25100--25206	34	3.1	33	78	14	85	34	0	3	61	1.14
25133--25211	34	2.4	34	85	8	101	37	0	1	60	1.05
25353--25406	17	3.2	17	72	0	54	31	0	3	64	1.11
26937--26984	21	2.3	21	85	0	60	25	39	12	22	1.89
26988--27081	21	4.5	21	89	5	136	18	34	26	21	1.96
27600--27694	28	3.2	28	85	8	100	53	4	2	40	1.32
27625--27694	34	2.1	34	91	0	113	57	2	1	38	1.23
27601--27701	34	3.2	32	77	17	111	54	4	1	38	1.33
28093--28720	128	4.9	128	94	1	1021	32	20	24	22	1.98
28791--28831	8	5.2	8	82	5	57	36	29	0	34	1.58
33229--33263	2	17.5	2	87	0	52	42	5	0	51	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33227--33264	20	1.9	20	100	0	76	39	10	0	50	1.37
33262--33298	17	2.3	15	83	16	56	35	27	8	29	1.85
33266--33298	17	1.9	17	100	0	66	36	24	9	30	1.86
33905--33955	23	2.2	23	100	0	102	29	11	13	45	1.79
38102--38136	13	2.6	14	86	4	54	31	0	0	68	0.90
42812--42892	41	2.0	41	85	0	108	37	9	17	35	1.83
43779--43824	20	2.3	21	78	17	53	45	2	4	47	1.34
44432--44462	16	2.0	16	93	6	55	29	6	0	64	1.18
55538--55594	21	2.8	19	77	15	60	24	21	21	33	1.97
56501--56675	21	8.4	21	82	12	209	32	28	20	19	1.97
56475--56634	42	3.8	40	92	4	221	33	28	19	19	1.96
56501--56675	61	2.8	60	86	6	190	32	28	20	19	1.97
56564--56691	42	3.2	40	83	8	152	32	26	20	20	1.97
56625--56691	19	3.3	19	74	12	62	35	22	20	20	1.96
56501--56691	103	1.9	103	90	0	310	32	27	19	19	1.97
56687--56739	21	2.5	21	93	0	88	16	20	32	30	1.95
59551--59660	15	7.4	15	62	2	51	52	5	7	34	1.52
59555--59611	19	3.4	19	65	34	58	52	7	7	33	1.55
59554--59672	30	4.0	30	97	2	231	52	6	6	33	1.54
59541--59680	59	2.4	58	92	4	237	52	6	5	35	1.51
62951--62989	10	4.0	10	83	6	53	30	30	0	38	1.58
63009--63055	24	2.0	24	83	8	60	29	0	4	65	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63012--63065	23	2.4	22	79	14	56	31	0	3	64	1.11
63035--63072	18	2.2	18	95	4	69	31	0	2	65	1.06

Tables:   1

The End!