genome.fa.s1809.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001809.1 Hibiscus syriacus cultivar Beakdansim tig00003660_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115519

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2677--3220	202	2.7	201	82	4	643	31	19	20	28	1.97
3628--3906	37	7.6	37	76	13	229	44	6	8	41	1.59
3657--3789	69	1.9	69	90	4	214	45	5	7	42	1.55
3697--3766	28	2.4	30	88	4	99	44	4	7	44	1.51
3633--3738	39	2.7	39	88	5	124	45	4	7	42	1.53
3633--3906	75	3.7	73	78	11	233	43	5	8	42	1.58
5236--5301	31	2.2	28	77	17	69	27	6	1	65	1.25
5262--5288	8	3.4	8	100	0	54	22	0	0	77	0.76
8546--8606	14	4.4	14	79	8	61	24	29	22	22	1.99
8666--8691	13	2.0	13	100	0	52	15	23	23	38	1.92
10221--10267	12	3.9	12	97	0	85	8	19	17	55	1.67
10413--10481	32	2.2	32	86	2	95	14	24	27	33	1.94
11248--11302	20	2.8	20	97	0	101	29	16	30	23	1.96
14937--14976	21	1.9	21	89	0	62	27	12	17	42	1.85
26296--26336	20	2.1	20	90	4	66	29	9	39	21	1.86
32312--32398	36	2.4	36	84	5	115	26	20	24	28	1.99
32918--32946	4	7.2	4	100	0	58	24	0	0	75	0.80
34561--34980	158	2.6	159	83	4	508	27	18	5	48	1.71
35340--35392	21	2.5	21	93	0	88	28	28	22	20	1.99
35407--35833	42	10.3	42	95	0	718	20	19	22	37	1.94
35926--35956	6	5.2	6	96	0	53	35	45	16	3	1.63
36507--36602	21	4.7	20	72	12	79	36	22	18	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36510--36602	40	2.3	42	90	3	145	37	23	18	20	1.94
37098--37291	73	2.6	74	80	7	225	44	4	12	37	1.64
38223--38247	13	1.9	13	100	0	50	20	0	16	64	1.30
46063--46108	2	23.0	2	100	0	92	50	0	0	50	1.00
46688--46748	21	3.0	21	85	9	90	21	36	27	14	1.93
46688--46748	20	3.0	20	88	7	88	21	36	27	14	1.93
46716--46798	34	2.4	35	89	2	123	22	34	22	19	1.96
46911--46952	21	2.0	21	95	0	75	23	21	28	26	1.99
46982--47021	20	1.9	21	85	10	55	37	37	10	15	1.80
49618--49669	20	2.5	21	87	6	79	40	21	15	23	1.91
53472--53673	75	2.7	75	85	2	255	21	23	31	23	1.98
56280--56319	21	1.9	21	89	0	62	10	25	40	25	1.86
62122--62322	76	2.6	76	86	1	269	20	23	33	22	1.97
70312--70336	11	2.3	11	100	0	50	92	0	8	0	0.40
74210--74255	21	2.2	21	92	0	74	0	54	0	45	0.99
74621--74668	2	24.0	2	100	0	96	50	0	0	50	1.00
82362--82473	55	2.0	56	87	1	163	40	11	13	34	1.81
82984--83028	21	2.1	22	87	4	65	33	8	8	48	1.65
85932--85974	22	2.0	22	81	9	52	46	0	4	48	1.22
86479--86519	18	2.4	17	83	4	55	58	21	0	19	1.39
87019--87076	31	1.9	30	83	13	75	36	3	17	43	1.66
88356--88412	21	2.8	21	86	2	80	22	19	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90783--90831	20	2.5	19	80	12	55	30	14	10	44	1.78
92155--92211	20	2.8	21	76	10	55	21	17	26	35	1.95
99643--99740	31	3.4	28	68	14	72	39	5	22	32	1.76
99615--99756	60	2.4	60	81	1	160	38	4	23	33	1.77
114590--114635	23	2.0	23	83	8	58	54	15	2	28	1.53

Tables:   1

The End!