genome.fa.s181.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000181.1 Hibiscus syriacus cultivar Beakdansim tig00000316_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117223

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4721--4748	10	2.8	10	100	0	56	92	0	7	0	0.37
11682--11712	16	1.9	16	93	0	53	48	19	12	19	1.81
19686--19720	18	1.9	18	94	0	61	34	0	0	65	0.93
22619--22965	109	3.1	111	90	2	565	44	14	14	26	1.84
22837--23291	182	2.5	181	90	1	707	43	12	15	28	1.83
24624--24666	22	2.0	23	86	9	63	44	4	4	46	1.45
24876--24951	29	2.6	28	85	8	82	36	6	7	48	1.58
27095--27172	31	2.5	31	87	0	111	21	11	14	52	1.72
27443--27516	32	2.5	30	87	10	100	18	12	35	33	1.88
27438--27521	32	2.6	31	81	7	96	17	13	36	32	1.88
28046--28076	2	15.5	2	100	0	62	51	0	0	48	1.00
30089--30113	5	5.0	5	100	0	50	0	20	20	60	1.37
32823--32983	64	2.5	65	85	7	195	33	18	21	27	1.96
33475--33509	18	1.9	18	88	11	54	54	5	17	22	1.64
33837--33894	2	29.0	2	100	0	116	50	0	0	50	1.00
34577--34621	23	2.0	23	90	0	72	22	26	26	24	2.00
37732--37892	64	2.5	63	83	7	182	33	17	21	27	1.96
38855--38899	23	2.0	23	86	0	63	22	28	24	24	1.99
47476--47508	3	11.3	3	93	6	59	69	0	0	30	0.88
47442--47514	35	2.1	35	87	5	103	65	2	5	26	1.27
47719--48043	43	7.6	43	72	11	245	22	19	31	26	1.97
47753--48082	40	7.8	41	72	11	231	23	18	32	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47755--48121	86	4.3	85	73	12	286	24	19	31	24	1.98
47658--48134	129	3.7	129	96	1	832	23	19	31	25	1.98
48472--48554	35	2.3	36	82	10	100	38	10	18	32	1.85
48912--48991	40	2.0	40	95	0	142	36	11	21	31	1.88
48993--49318	67	4.9	67	95	2	559	44	11	12	31	1.78
49071--49551	30	15.6	29	69	19	151	43	14	11	30	1.81
49101--49288	37	5.5	36	67	19	141	44	10	11	32	1.75
49267--49539	27	9.5	28	75	12	180	42	16	11	30	1.83
49385--49539	27	5.6	27	85	8	181	41	17	11	29	1.84
49385--49539	56	2.8	55	83	12	183	41	17	11	29	1.84
49819--49913	36	2.7	34	79	9	93	31	12	20	35	1.90
49847--50085	105	2.3	101	82	7	268	36	11	19	31	1.88
52331--52401	26	3.0	24	71	20	78	42	11	22	23	1.86
52316--52408	46	2.0	45	89	2	141	39	9	24	25	1.86
53816--53877	32	2.0	32	96	3	117	61	9	14	14	1.57
57915--57947	3	11.3	3	93	6	59	69	0	0	30	0.88
60787--60833	19	2.4	20	83	16	55	68	2	10	19	1.30
60777--60833	25	2.2	26	81	9	64	66	1	10	21	1.31
64571--65142	279	2.0	280	95	1	1022	16	24	11	48	1.77
68084--68146	17	3.8	16	78	17	51	4	28	1	65	1.22
68089--68135	8	5.8	8	78	11	51	2	27	2	68	1.13
75243--75347	55	1.9	56	98	2	203	41	8	25	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76618--76662	21	2.1	21	87	0	63	31	28	24	15	1.96
77244--77278	18	1.9	18	88	11	54	54	5	17	22	1.64
77335--77378	22	2.0	22	86	4	63	45	0	22	31	1.53
77606--77637	2	16.0	2	100	0	64	50	0	0	50	1.00
78174--78477	149	2.0	149	96	0	563	27	17	21	34	1.95
78456--78500	23	2.0	23	86	0	63	20	24	28	26	1.99
81767--81811	21	2.1	21	87	0	63	31	28	24	15	1.96
82393--82427	18	1.9	18	88	11	54	54	5	17	22	1.64
82484--82527	22	2.0	22	86	4	63	45	0	22	31	1.53
82663--82694	2	16.0	2	100	0	64	50	0	0	50	1.00
83317--83620	149	2.0	149	97	0	572	27	17	20	34	1.95
83599--83643	23	2.0	23	86	0	63	20	24	28	26	1.99
87354--87417	31	2.1	31	82	5	76	50	12	6	31	1.65
91442--91486	23	2.0	23	90	0	72	24	26	26	22	2.00
91454--91768	149	2.1	149	94	1	551	34	20	16	27	1.95
91869--91896	14	2.0	14	100	0	56	35	28	7	28	1.84
96727--96917	31	6.2	31	96	0	337	34	16	11	37	1.85
97426--97602	64	2.8	64	81	5	196	25	19	23	31	1.98
97489--97634	64	2.3	64	85	7	190	26	21	19	32	1.97
100221--100473	31	8.2	31	96	0	461	33	16	12	38	1.85
100308--100391	15	5.5	15	64	25	50	32	15	13	39	1.86
100983--101159	64	2.8	64	81	5	205	24	18	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102039--102126	33	2.6	33	83	7	106	63	13	2	20	1.40
102986--103030	23	2.0	23	86	0	63	26	26	26	20	1.99
103725--103767	21	2.0	21	86	0	59	16	25	27	30	1.97
106302--106343	17	2.4	19	80	15	54	64	2	0	33	1.07
106297--106354	29	2.0	30	83	10	75	63	1	0	34	1.04

Tables:   1

The End!