genome.fa.s1810.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001810.1 Hibiscus syriacus cultivar Beakdansim tig00003662_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127515

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2161--2366	103	2.0	104	87	0	297	32	16	14	36	1.90
7885--7950	20	3.1	21	79	14	82	75	0	4	19	0.97
7989--8193	35	5.6	36	74	15	97	42	7	4	44	1.53
7971--8194	37	6.1	36	76	11	188	42	8	4	44	1.55
8060--8320	72	3.7	72	75	17	235	42	8	3	45	1.52
8206--8267	28	2.2	28	86	8	90	41	9	1	46	1.46
8204--8266	29	2.2	30	88	5	94	42	9	1	46	1.46
8945--8979	17	2.1	17	88	0	52	17	8	2	71	1.23
10063--10106	23	1.9	23	85	0	61	50	0	2	47	1.13
10153--10194	20	2.2	19	86	4	57	64	2	0	33	1.07
10086--10418	119	2.8	119	91	2	517	45	9	8	36	1.67
10272--10313	20	2.2	19	86	4	57	64	2	0	33	1.07
10592--10630	19	2.1	19	90	4	62	69	2	2	25	1.14
12183--12857	113	6.0	113	88	2	937	28	18	15	38	1.91
12183--12857	337	2.0	338	91	1	1095	28	18	15	38	1.91
12184--12830	224	2.9	226	87	1	888	28	18	14	38	1.90
14375--14410	7	5.0	7	86	6	54	0	13	0	86	0.58
14373--14424	12	4.6	12	81	11	65	3	13	0	82	0.80
14373--14421	22	2.2	22	92	0	80	4	12	0	83	0.77
14372--14407	15	2.3	16	90	4	56	0	13	0	86	0.58
14373--14409	10	3.5	10	89	10	56	0	10	0	89	0.49
25047--25111	28	2.2	28	81	10	69	61	1	6	30	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25594--25642	23	2.0	25	84	7	66	53	0	2	44	1.12
25689--25730	20	2.2	19	86	4	57	64	2	0	33	1.07
27254--27316	3	21.7	3	78	12	69	61	0	0	38	0.96
29061--29138	21	3.7	21	98	0	147	17	19	19	43	1.88
29145--29276	20	6.6	20	81	5	97	32	21	20	25	1.98
29141--29278	40	3.5	40	85	2	161	31	21	20	26	1.98
29165--29278	20	5.7	20	83	4	122	29	22	21	26	1.99
29453--29494	22	1.9	22	90	9	68	26	40	14	19	1.89
29869--29956	20	4.4	20	85	1	88	14	15	23	45	1.84
29920--29963	20	2.2	20	91	0	70	11	13	20	54	1.69
31870--31915	20	2.3	20	88	7	67	32	26	21	19	1.97
31962--32026	20	3.3	20	80	4	80	20	15	24	40	1.91
32516--32614	21	4.7	21	75	3	92	22	35	20	22	1.96
32514--32623	42	2.6	42	74	5	114	20	36	19	23	1.95
34007--34072	30	2.2	30	100	0	132	28	3	13	54	1.54
34227--34559	20	17.6	20	76	11	148	23	19	21	35	1.96
34178--34363	73	2.5	73	85	3	230	24	19	20	36	1.95
34227--34559	40	8.8	40	74	12	274	23	19	21	35	1.96
34377--34531	54	2.9	53	89	1	220	21	20	21	36	1.95
34357--34556	74	2.7	73	77	6	206	21	20	22	36	1.95
34735--34769	18	1.9	18	94	0	61	17	2	25	54	1.57
37029--37082	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37900--38014	20	5.8	20	73	11	92	26	20	20	33	1.97
37921--38014	40	2.3	40	90	0	143	25	19	19	36	1.95
38581--38622	10	4.2	10	84	0	57	33	30	0	35	1.58
38581--38622	20	2.1	20	90	0	66	33	30	0	35	1.58
38651--38729	29	2.8	28	75	19	83	24	6	3	65	1.32
44474--44530	29	1.9	30	85	3	80	17	0	36	45	1.49
45552--45581	2	15.0	2	100	0	60	50	0	0	50	1.00
51600--51659	27	2.2	27	96	0	111	30	11	23	35	1.90
52534--52587	20	2.7	20	100	0	108	29	16	24	29	1.97
61980--62037	23	2.5	23	91	2	89	22	17	24	36	1.95
90310--90399	42	2.1	42	87	0	126	33	25	15	25	1.95
95092--95348	128	2.0	130	92	3	430	40	16	14	27	1.88
95816--95857	16	2.6	16	96	0	75	38	14	14	33	1.86
98866--99079	85	2.5	86	78	8	231	46	7	19	26	1.77
98866--99080	44	5.0	44	76	7	163	46	7	19	26	1.77
98866--99112	88	2.9	85	76	11	243	45	7	19	27	1.77
98974--99268	158	1.9	156	86	8	420	46	8	18	26	1.77
99118--99342	44	5.2	41	75	16	163	48	5	20	26	1.70
99196--99352	42	3.7	43	77	16	141	49	6	17	26	1.70
99386--99441	29	2.0	28	82	6	69	46	8	25	19	1.79
100205--100256	21	2.5	21	78	6	52	23	21	25	30	1.99
108949--109007	30	2.0	30	93	0	100	40	10	15	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109304--109434	70	1.9	70	95	0	235	42	12	11	33	1.78
112786--112830	22	2.0	23	87	8	67	37	17	4	40	1.70
113931--114020	30	3.0	29	75	4	90	33	13	7	45	1.72
115243--115274	17	1.9	17	93	6	57	46	18	6	28	1.73
117663--117687	2	12.5	2	100	0	50	52	0	0	48	1.00
118186--119258	200	5.4	199	75	5	812	34	19	19	26	1.96
120130--120244	25	4.6	25	98	1	223	39	35	12	13	1.81
121885--121979	41	2.3	41	79	0	100	34	20	17	27	1.95
126818--126979	44	3.8	43	77	11	138	22	19	20	37	1.94

Tables:   1

The End!