genome.fa.s1811.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001811.1 Hibiscus syriacus cultivar Beakdansim tig00003666_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61169

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
990--1048	29	2.0	29	90	0	91	28	20	5	45	1.72
1098--1158	29	2.1	29	87	0	86	24	22	8	44	1.80
986--1239	110	2.3	108	88	2	366	27	21	10	40	1.86
1129--1441	81	3.9	81	86	4	413	28	22	13	36	1.92
1127--1421	158	1.8	161	88	7	458	27	22	12	37	1.90
1388--1904	68	7.7	68	89	4	762	30	27	14	27	1.95
2134--2268	53	2.5	53	79	12	143	35	18	10	35	1.85
2642--2828	93	2.0	94	87	3	270	29	23	14	32	1.95
4036--4073	17	2.2	17	90	0	58	44	13	10	31	1.77
5247--5307	29	2.1	29	90	0	95	24	24	8	42	1.82
5167--5387	109	2.1	103	86	7	300	26	23	10	39	1.87
5276--5593	81	3.9	81	86	0	413	25	23	12	38	1.90
5540--6002	68	6.8	67	87	2	631	31	24	14	29	1.94
5557--6002	204	2.2	204	89	0	696	32	24	14	29	1.94
6211--6352	54	2.6	54	85	4	180	35	21	13	30	1.91
6795--6852	22	2.8	20	77	10	62	31	29	12	27	1.92
6738--6926	94	2.0	95	91	1	308	28	24	14	32	1.95
6929--6983	21	2.6	21	94	0	101	36	14	14	34	1.87
11194--11238	16	2.8	16	86	6	65	31	4	24	40	1.75
11194--11240	8	5.9	8	80	9	51	31	4	25	38	1.75
11320--11491	68	2.5	69	89	0	265	35	12	22	29	1.91
11427--11738	83	3.7	83	90	2	475	32	17	21	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12728--12788	32	1.9	32	100	0	122	57	19	4	18	1.58
13586--13639	18	3.0	18	80	0	54	11	48	5	35	1.62
22832--22875	7	6.3	7	100	0	88	13	0	40	45	1.44
23392--23419	10	2.8	10	100	0	56	17	0	21	60	1.36
25664--25698	17	2.1	17	100	0	70	28	5	17	48	1.69
38500--38672	90	1.9	89	91	1	283	43	6	9	39	1.65
43358--43382	2	12.5	2	100	0	50	48	0	0	52	1.00
55103--55197	41	2.3	43	80	10	108	29	15	24	30	1.96
55213--55343	41	3.2	41	69	10	122	35	19	20	24	1.96
55162--55383	83	2.7	83	84	0	282	34	20	22	23	1.97
55245--55383	42	3.3	41	72	6	118	35	20	23	20	1.96

Tables:   1

The End!