Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001812.1 Hibiscus syriacus cultivar Beakdansim tig00003667_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68883

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7864--7909
24
2.0
24
95
4
85
39
21
21
17
1.93
8082--8163
40
2.0
40
95
0
146
43
18
7
30
1.77
8133--8162
15
2.0
15
93
0
51
43
16
6
33
1.74
8166--8219
15
3.5
15
75
9
54
44
22
3
29
1.70
8168--8205
17
2.2
17
90
0
58
47
23
2
26
1.65
14896--14966
24
2.9
24
79
4
79
30
22
22
23
1.99
14896--14966
25
2.9
25
80
2
81
30
22
22
23
1.99
18459--18500
2
21.0
2
100
0
84
50
0
0
50
1.00
23533--23603
19
3.7
19
96
0
124
22
30
21
25
1.98
25846--25888
18
2.5
17
85
7
61
67
2
4
25
1.22
26237--26374
37
3.8
36
84
6
172
29
14
13
42
1.84
26271--26371
34
2.9
35
91
8
161
27
14
13
43
1.84
26920--28003
105
10.4
105
81
6
1123
21
20
25
33
1.97
27211--27998
109
7.6
100
78
9
592
21
20
24
33
1.97
26966--27998
203
5.0
203
82
8
1085
21
19
25
33
1.97
28257--28330
37
2.0
37
83
0
94
39
10
21
28
1.87
28438--28618
65
2.8
65
92
0
299
35
12
20
30
1.90
28503--28858
102
3.5
102
93
0
595
36
12
20
30
1.90
28568--28876
37
8.9
37
68
19
216
36
13
20
28
1.91
28772--28876
36
2.9
36
89
1
156
38
14
22
24
1.92
29670--29720
22
2.3
22
96
0
93
25
11
27
35
1.91
30337--30385
22
2.3
22
86
6
66
0
16
8
75
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30349--30391
22
2.0
23
86
9
63
0
20
4
74
1.00
33578--33620
18
2.5
17
85
7
61
67
2
4
25
1.22
33979--34116
37
3.8
36
84
6
172
29
14
13
42
1.84
34013--34113
34
2.9
35
91
8
161
27
14
13
43
1.84
34369--34410
21
2.0
21
85
0
57
59
9
7
23
1.53
38028--38089
23
2.8
22
81
13
74
24
32
22
20
1.98
41616--41654
20
2.0
20
89
0
60
30
33
15
20
1.94
43640--43697
30
1.9
30
89
6
91
17
8
12
62
1.54
45524--46302
165
4.7
167
77
6
681
31
24
19
25
1.98
45556--46385
250
3.3
248
85
3
1103
31
23
19
25
1.98
45538--46319
84
9.4
84
75
6
592
31
24
19
25
1.98
52862--53121
84
3.2
80
80
9
299
30
24
20
25
1.98
52905--53194
84
3.5
85
77
7
299
31
24
19
24
1.98
57472--57510
20
2.0
19
85
14
53
35
0
5
58
1.20
59673--59701
14
2.1
14
100
0
58
37
13
20
27
1.91
62949--62978
15
2.1
14
93
6
51
90
0
0
10
0.47

Tables:   1

The End!