Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001813.1 Hibiscus syriacus cultivar Beakdansim tig00003672_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114890

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6133--6164
16
2.0
16
93
0
55
28
6
0
65
1.16
17255--17517
42
6.3
41
92
0
402
20
18
23
36
1.95
17255--17520
84
3.2
84
92
1
446
21
18
23
36
1.95
17245--17517
126
2.2
124
92
2
447
20
19
23
36
1.95
18277--18315
6
6.5
6
100
0
78
0
15
51
33
1.44
18408--18512
42
2.5
42
98
0
201
35
24
20
20
1.96
18433--18573
61
2.3
61
90
2
210
35
24
19
20
1.96
18496--18581
42
2.2
38
89
8
127
38
22
18
20
1.94
23858--23954
37
2.6
37
83
0
131
40
13
11
35
1.80
24570--24619
23
2.0
26
88
11
79
28
0
2
70
0.99
24636--24675
11
3.5
11
86
6
53
25
5
5
65
1.34
29568--29617
8
6.2
8
82
13
59
86
0
14
0
0.58
29568--29625
28
2.1
28
87
6
82
84
1
13
0
0.70
29562--29617
12
4.8
12
80
4
69
85
1
12
0
0.67
29575--29617
10
4.0
11
85
14
63
86
0
13
0
0.58
29562--29639
16
5.2
15
71
17
54
82
5
11
1
0.89
30244--30298
22
2.5
22
96
0
101
36
25
14
23
1.93
31121--32600
106
14.0
106
89
2
2117
34
24
17
23
1.96
33688--33755
2
34.0
2
100
0
136
50
0
0
50
1.00
33912--33956
21
2.1
21
88
8
65
28
0
2
68
1.01
33974--34014
11
3.6
11
87
6
55
24
4
4
65
1.32
34023--34047
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44337--44458
21
5.7
22
83
6
128
23
36
24
14
1.93
60070--60108
2
19.5
2
100
0
78
48
0
0
51
1.00
60109--60140
8
4.0
8
100
0
64
25
12
12
50
1.75
61435--61472
20
1.9
20
88
0
58
21
26
10
42
1.85
63883--63971
30
3.0
30
94
0
160
24
22
21
31
1.98
67712--67755
18
2.4
18
92
0
70
13
27
25
34
1.93
80368--80432
31
2.1
31
91
0
103
23
15
29
32
1.95
90506--90559
19
2.8
20
75
11
58
68
3
1
25
1.16
94408--94603
76
2.6
76
95
1
351
27
1
9
61
1.36
98028--98101
5
14.8
5
69
10
53
21
5
2
70
1.20
100049--100175
44
3.2
43
67
25
123
25
0
12
60
1.37
100049--100250
76
2.7
76
93
2
345
26
0
12
59
1.40
100918--100966
19
2.5
19
87
9
64
22
6
0
71
1.08
100894--100966
20
3.7
21
75
17
75
24
5
0
69
1.09
104898--104987
45
2.0
45
93
2
155
27
23
7
41
1.82
106262--106286
11
2.3
11
100
0
50
16
8
0
76
1.02
112016--112043
10
2.8
10
100
0
56
10
28
28
32
1.90
112744--112792
19
2.7
17
84
9
53
26
18
30
24
1.98
112764--112868
45
2.3
45
100
0
210
27
16
27
28
1.97
112854--113015
63
2.5
64
84
5
202
25
15
25
33
1.95
112914--112952
19
2.1
19
95
0
69
25
15
38
20
1.92
112977--113016
21
1.9
21
94
0
71
22
15
30
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
113332--113361
15
2.0
15
100
0
60
40
20
6
33
1.78

Tables:   1

The End!