genome.fa.s1814.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001814.1 Hibiscus syriacus cultivar Beakdansim tig00003673_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53392

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348--420	20	3.7	20	81	5	87	30	16	23	30	1.96
2632--2671	21	2.0	20	85	14	55	42	17	10	30	1.82
4246--5082	182	4.6	181	86	3	1037	42	13	16	27	1.85
4247--5082	363	2.3	356	84	5	1054	42	13	16	27	1.85
9918--10598	199	3.4	198	89	3	1028	39	13	14	32	1.86
10733--10783	23	2.2	23	86	6	68	35	19	7	37	1.81
10843--10878	16	2.2	17	90	5	56	30	16	5	47	1.70
14008--14064	24	2.4	24	96	0	105	45	15	12	26	1.82
16749--16800	27	1.9	27	84	7	70	36	3	1	57	1.28
26717--26753	2	18.5	2	100	0	74	51	0	0	48	1.00
27841--27905	4	16.2	4	100	0	130	24	50	24	0	1.49
27903--27934	2	16.0	2	100	0	64	50	50	0	0	1.00
28439--28542	36	2.9	36	79	1	102	32	19	11	36	1.87
28732--28793	28	2.2	28	88	0	88	20	12	14	51	1.75
28897--29017	64	1.9	64	84	5	165	29	14	14	42	1.84
28897--29115	67	3.3	63	73	11	174	29	15	13	41	1.85
29102--29216	31	3.7	31	77	5	108	26	17	13	41	1.87
29080--29201	62	2.0	62	83	3	156	29	15	13	41	1.85
29080--29202	31	3.9	32	76	6	119	29	16	13	41	1.85
29227--29739	135	3.9	132	77	11	437	28	27	17	27	1.97
29901--29964	3	20.7	3	87	3	56	35	6	0	57	1.24
33009--33040	14	2.3	14	94	0	55	37	18	18	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40268--40298	2	15.5	2	100	0	62	51	0	0	48	1.00
52131--52178	20	2.3	21	96	3	89	25	22	22	29	1.99
52333--52367	18	2.0	18	88	5	54	42	8	5	42	1.59

Tables:   1

The End!