Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001815.1 Hibiscus syriacus cultivar Beakdansim tig00003674_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68595

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1942--2672
371
2.0
372
94
3
1294
32
18
16
32
1.94
6427--6633
36
5.8
36
91
2
344
27
15
14
42
1.86
11891--11960
30
2.3
30
78
9
72
44
5
15
34
1.71
14092--14194
36
2.9
36
94
0
179
28
16
13
41
1.86
16780--16811
15
2.0
17
88
11
50
31
15
6
46
1.71
18057--18101
17
2.6
17
82
3
63
68
0
0
31
0.89
18064--18183
57
2.1
55
77
11
125
70
0
5
23
1.15
18088--18191
23
4.6
22
72
20
72
73
0
6
19
1.11
18137--18193
23
2.5
23
83
11
73
80
1
3
14
0.92
18855--18914
16
3.7
16
84
4
84
8
6
35
50
1.59
19206--19252
3
15.7
3
82
8
60
72
0
0
27
0.85
19266--19503
36
6.6
37
74
20
143
44
8
2
44
1.47
19313--19377
29
2.3
29
86
7
89
46
9
1
43
1.45
19330--19377
13
3.1
16
80
20
66
45
10
0
43
1.38
19341--19528
74
2.5
75
88
6
267
46
7
2
43
1.45
19341--19528
38
5.1
37
82
8
240
46
7
2
43
1.45
20089--20115
2
13.5
2
100
0
54
51
0
0
48
1.00
28506--28566
20
2.9
21
80
11
54
24
31
26
18
1.97
28549--28588
21
1.9
21
89
0
62
25
40
25
10
1.86
31154--31197
23
2.0
23
81
4
54
50
11
2
36
1.51
33844--33870
3
9.0
3
100
0
54
66
0
0
33
0.92
33926--33978
21
2.4
22
81
9
63
49
3
3
43
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34365--35208
85
9.9
85
89
2
1151
25
18
20
34
1.96
34378--35208
339
2.4
339
88
2
1229
26
18
20
34
1.96
35656--35700
16
2.8
16
96
0
81
48
6
13
31
1.68
36972--37007
12
2.8
13
91
8
65
36
5
8
50
1.56
38838--38879
19
2.2
19
86
4
57
69
14
0
16
1.20
39288--39338
23
2.3
22
86
6
77
35
19
19
25
1.95
41355--41379
12
2.1
12
100
0
50
24
32
16
28
1.96
46090--46275
99
1.9
99
92
2
311
27
17
19
34
1.95
50762--50804
17
2.7
16
82
7
52
58
4
9
27
1.49
51835--51876
22
1.9
22
85
9
59
54
4
0
40
1.21
51825--51876
20
2.4
22
81
12
63
50
3
3
42
1.39
52855--52886
12
2.8
11
90
9
55
28
25
9
37
1.87
54624--54673
19
2.6
19
78
12
57
20
26
20
34
1.96

Tables:   1

The End!