genome.fa.s1817.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001817.1 Hibiscus syriacus cultivar Beakdansim tig00003677_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183128

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2776--2818	14	3.0	14	86	3	59	9	16	62	11	1.53
2777--2827	15	3.5	14	86	5	66	7	17	66	7	1.41
5303--5351	19	2.6	19	87	6	64	46	12	26	14	1.79
6084--6140	25	2.3	25	100	0	114	31	14	24	29	1.94
11085--11136	23	2.5	20	82	17	61	42	0	0	57	0.98
11088--11144	20	2.8	21	84	10	66	42	1	0	56	1.10
13006--13046	12	3.5	12	83	3	57	26	2	2	68	1.15
12984--13046	11	5.8	11	73	17	51	26	4	1	66	1.20
23980--24032	15	3.5	15	86	0	70	11	5	62	20	1.49
24327--24365	17	2.3	17	86	0	51	43	5	7	43	1.55
24769--24820	15	3.5	15	91	0	86	7	67	17	7	1.39
27306--27459	65	2.4	65	89	4	222	28	22	18	29	1.98
31315--31412	41	2.4	41	96	0	178	32	20	10	36	1.86
38776--38870	44	2.2	43	83	5	120	44	1	1	53	1.14
40193--40221	15	2.0	15	93	6	51	55	0	3	41	1.17
41480--41517	2	19.0	2	100	0	76	50	0	0	50	1.00
41733--41831	2	49.5	2	100	0	198	49	0	0	50	1.00
42929--42968	15	2.5	15	88	12	53	30	27	12	30	1.93
46378--46415	17	2.2	17	95	0	67	18	44	23	13	1.85
47338--47503	42	4.0	41	88	3	233	18	23	25	32	1.97
47338--47503	84	2.0	84	90	4	264	18	23	25	32	1.97
54157--54195	20	2.0	20	84	0	51	38	0	2	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54584--54749	42	4.0	41	92	3	260	18	24	25	31	1.98
57325--57366	17	2.4	18	92	4	68	30	26	11	30	1.92
67421--67487	31	2.1	32	84	15	86	55	5	1	37	1.34
69624--69686	3	21.7	3	72	18	53	68	0	4	26	1.10
70684--70786	4	25.8	4	97	0	197	50	23	0	26	1.49
71182--72019	105	8.0	105	88	1	1166	22	18	25	33	1.97
72840--72869	6	5.2	6	92	8	53	0	13	0	86	0.57
72840--72870	11	2.7	11	95	5	53	0	12	0	87	0.55
82721--82745	13	1.9	13	100	0	50	16	16	40	28	1.89
83705--83750	24	1.9	24	86	0	65	63	4	4	28	1.33
84720--84758	2	19.5	2	100	0	78	51	0	0	48	1.00
86412--86592	44	4.2	44	82	4	188	31	12	25	30	1.93
95000--95123	42	3.0	43	85	10	136	42	19	11	26	1.85
95587--95625	18	2.2	18	85	0	51	53	17	0	28	1.44
100650--100707	23	2.5	23	83	5	64	63	3	25	6	1.35
101191--101227	19	1.9	19	88	0	56	40	8	16	35	1.78
107244--107307	27	2.4	27	94	0	110	29	7	28	34	1.85
108411--108436	11	2.4	11	100	0	52	30	7	23	38	1.83
111990--112047	20	2.9	19	87	5	71	31	12	24	32	1.91
114082--114117	18	2.1	18	89	5	56	11	5	13	69	1.34
115042--115071	12	2.5	12	100	0	60	13	50	10	26	1.73
125838--125877	18	2.3	17	91	4	62	47	5	0	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125824--125883	13	4.2	13	73	24	50	51	5	0	43	1.23
125812--125886	30	2.5	29	81	10	80	52	4	0	44	1.20
126072--126181	42	2.6	42	95	0	193	39	8	11	40	1.72
126076--126147	24	3.2	24	64	22	66	38	6	13	40	1.72
126398--126442	24	1.9	24	86	4	65	46	8	6	37	1.61
126401--126471	37	1.9	37	85	5	99	40	9	9	39	1.72
128192--128522	102	3.3	102	90	2	524	21	9	18	50	1.75
131650--131696	14	3.7	14	71	26	50	51	4	0	44	1.21
131648--131697	23	2.1	24	96	3	93	48	4	0	48	1.20
131962--132005	16	2.8	16	85	0	61	47	9	20	22	1.78
140316--140352	19	2.0	18	94	5	65	18	0	0	81	0.70
140901--140940	21	1.9	21	94	0	71	32	30	15	22	1.94
140966--141004	19	2.1	19	90	0	60	23	35	15	25	1.94
140901--141065	64	2.5	65	81	6	183	32	24	15	26	1.96
140901--141092	64	3.0	62	76	12	172	33	24	15	27	1.95
144213--144258	18	2.6	18	96	0	83	17	52	19	10	1.74
144235--144264	13	2.3	13	100	0	60	16	46	23	13	1.82
145582--145617	18	2.0	18	88	0	54	52	0	16	30	1.44
146760--146859	24	4.2	24	72	10	87	22	13	17	48	1.81
148994--149023	13	2.3	13	100	0	60	16	46	23	13	1.82
150340--150375	18	2.0	18	88	0	54	52	0	16	30	1.44
151518--151617	24	4.2	24	72	10	87	22	13	17	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153694--153739	9	4.9	9	79	10	56	13	19	32	34	1.90
153753--153782	13	2.3	13	100	0	60	16	46	23	13	1.82
155099--155134	18	2.0	18	88	0	54	52	0	16	30	1.44
156277--156376	24	4.2	24	72	10	87	22	13	17	48	1.81
160562--160644	24	3.7	22	75	16	82	25	25	21	27	1.99
162846--162875	15	2.0	15	100	0	60	33	6	20	40	1.78
163198--163237	21	1.9	21	94	0	71	32	30	15	22	1.94
163251--163301	19	2.7	19	82	8	61	25	35	15	23	1.94
163201--163362	64	2.5	65	84	7	186	34	25	14	24	1.94
163348--163452	45	2.3	45	98	0	201	27	27	16	28	1.97
164184--164211	10	2.8	10	100	0	56	32	28	28	10	1.90
169987--170012	12	2.2	12	100	0	52	76	0	7	15	0.99
171293--171382	45	2.0	44	93	2	153	41	7	23	27	1.82
175327--175375	19	2.5	19	87	9	64	71	0	6	22	1.08
176048--176252	74	2.7	76	93	3	353	60	12	0	26	1.39
178193--178231	20	2.0	20	89	0	60	69	2	2	25	1.14
181667--181877	70	2.8	74	88	9	290	59	10	1	28	1.39

Tables:   1

The End!