genome.fa.s1819.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001819.1 Hibiscus syriacus cultivar Beakdansim tig00003683_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76741

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710--768	30	2.0	29	90	9	93	16	8	13	61	1.56
5352--5405	26	2.1	25	83	16	67	59	0	3	37	1.15
6870--6900	9	3.6	9	95	4	55	80	0	9	9	0.90
6937--6984	23	2.1	23	84	0	60	72	2	10	14	1.19
7302--7365	2	33.0	2	93	6	114	51	0	0	48	1.00
7908--7981	37	2.0	36	94	2	130	31	14	13	40	1.85
8717--8810	35	2.6	36	91	1	154	28	6	18	46	1.73
8796--9128	73	4.7	73	73	11	282	42	14	18	24	1.87
8815--8880	21	3.4	21	66	25	63	42	13	19	24	1.87
8796--9193	36	11.4	36	72	15	282	41	13	18	25	1.87
8796--9203	174	2.3	174	89	2	613	42	13	18	25	1.87
9114--9224	29	3.6	29	70	19	89	37	10	18	32	1.86
9090--9246	65	2.4	66	92	2	257	39	11	20	28	1.87
16801--16860	21	2.8	22	75	10	61	25	35	23	16	1.95
18416--18461	18	2.6	18	86	6	58	52	19	23	4	1.64
19097--19167	37	1.9	37	100	0	142	35	2	36	25	1.71
19097--19159	21	3.2	21	65	21	64	33	1	41	23	1.64
22840--22868	6	4.8	6	100	0	58	51	0	0	48	1.00
22964--23018	26	2.1	27	83	6	69	69	3	16	10	1.32
23567--23604	20	1.9	19	94	5	67	63	0	2	34	1.09
23957--24027	37	1.9	37	94	0	124	35	9	14	40	1.79
24303--24366	19	3.3	19	87	8	92	42	1	0	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24303--24356	21	2.7	21	91	5	85	40	0	0	59	0.98
28048--28091	14	2.9	16	86	6	65	47	13	20	18	1.82
30317--30417	51	2.0	51	94	0	175	36	11	20	30	1.89
32183--32226	14	2.9	15	93	6	72	47	13	22	15	1.81
32908--32956	25	2.0	25	84	8	64	42	6	14	36	1.70
37443--37499	28	2.0	28	93	0	96	43	17	21	17	1.88
41378--41536	41	3.9	41	95	0	282	38	12	11	37	1.80
42275--42327	21	2.5	21	84	0	70	22	24	16	35	1.95
42317--42390	20	3.7	20	74	3	85	37	20	20	21	1.94
42576--42651	22	3.5	22	83	0	89	26	39	15	18	1.91
42976--43048	33	2.2	34	85	7	96	15	20	24	39	1.91
43019--43068	20	2.5	20	90	0	73	18	18	28	36	1.94
43036--43090	20	2.8	20	88	0	74	12	16	21	49	1.79
43055--43098	20	2.2	20	83	0	52	15	13	18	52	1.75
44969--45145	20	9.5	20	79	16	184	41	21	18	18	1.90
44969--45166	40	5.5	37	77	14	193	42	21	19	17	1.89
44976--45177	107	1.9	107	95	0	368	43	20	19	16	1.89
45205--45345	20	7.4	20	82	9	152	16	19	21	43	1.88
45297--45355	20	3.0	20	89	0	64	15	18	23	42	1.88
45852--45920	21	3.3	21	70	0	57	21	36	17	24	1.95
47315--47350	14	2.6	14	90	0	54	30	0	22	47	1.52
47521--47614	20	4.7	20	82	2	118	20	20	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50040--50086	24	2.0	24	95	0	85	34	17	21	27	1.95
50044--50095	24	2.2	24	85	0	68	36	19	19	25	1.95
50733--50773	22	1.9	21	85	5	55	26	12	39	21	1.89
50924--50970	20	2.3	20	85	7	60	21	14	27	36	1.93
50964--51070	20	5.3	20	80	2	133	21	18	19	40	1.92
50944--51070	40	3.2	38	75	9	119	21	18	21	39	1.93
51067--51112	21	2.2	21	84	0	56	36	15	28	19	1.92
57436--57495	2	33.0	2	76	18	60	46	1	0	51	1.10
57415--57519	42	2.6	42	88	8	159	43	4	0	51	1.22
57518--57556	20	2.0	20	89	0	60	5	10	43	41	1.61
57552--57607	30	2.0	28	89	10	80	32	7	14	46	1.71
58909--58933	2	12.5	2	100	0	50	52	0	0	48	1.00
60655--60697	22	2.0	22	85	0	59	23	20	9	46	1.79
64664--64709	20	2.3	20	92	0	74	30	26	17	26	1.97
68108--68155	20	2.4	20	92	0	78	29	29	16	25	1.97
68199--68237	20	2.0	20	89	0	60	33	12	12	41	1.82
70845--70932	9	9.7	9	76	15	51	57	1	2	38	1.18
70889--70924	3	12.0	3	100	0	72	66	0	0	33	0.92

Tables:   1

The End!