Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000182.1 Hibiscus syriacus cultivar Beakdansim tig00000318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82768

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3802--3842
20
2.1
19
86
4
55
43
0
9
46
1.36
3785--3884
50
2.0
51
82
9
125
46
3
10
41
1.53
5756--5789
18
1.9
17
88
5
50
44
8
5
41
1.60
11036--11073
14
2.7
14
87
0
58
21
13
7
57
1.60
11259--11314
23
2.5
22
80
8
67
14
7
16
62
1.52
11320--11375
23
2.4
24
78
3
69
8
14
14
62
1.54
12729--12759
3
10.3
3
100
0
62
0
35
0
64
0.94
14770--14828
31
1.9
31
82
6
75
50
10
6
32
1.62
15908--16020
60
1.9
60
85
3
156
35
18
8
37
1.82
15923--16020
29
3.3
29
69
5
79
35
20
9
34
1.84
15928--16078
60
2.6
59
86
2
187
33
17
13
35
1.89
17330--17387
29
1.9
29
83
13
73
44
5
1
48
1.35
31812--31886
36
2.1
35
81
11
91
30
2
0
66
1.05
31830--31889
29
2.1
28
87
9
86
26
3
0
70
1.03
31747--31892
44
3.8
37
77
19
131
32
2
0
65
1.09
31747--31894
39
3.8
40
77
13
130
31
2
0
65
1.09
31843--31939
45
2.1
49
84
11
132
17
4
1
77
0.98
31843--31939
47
2.1
47
84
7
126
17
4
1
77
0.98
31879--31968
36
2.5
36
78
8
96
15
6
1
76
1.04
31843--31951
25
4.2
26
68
13
73
18
3
0
77
0.98
31753--31949
45
4.3
47
75
13
128
26
3
1
69
1.10
31880--31954
28
2.7
26
82
10
87
14
5
1
78
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35103--35152
14
3.8
13
80
19
59
76
4
18
2
1.04
35101--35153
27
2.0
26
92
3
88
75
3
16
3
1.10
35103--35153
13
3.8
14
82
12
63
74
3
17
3
1.12
35225--35362
69
2.0
69
87
2
197
38
21
15
25
1.92
36024--36111
32
2.7
31
77
6
86
28
14
22
34
1.94
36689--37011
106
3.0
105
84
1
403
33
22
20
23
1.97
37268--37445
86
2.1
87
92
3
297
32
19
12
36
1.89
37354--37547
102
1.9
102
91
0
316
30
19
11
38
1.87
37616--37849
36
6.6
36
76
11
189
26
20
13
39
1.89
37847--37923
39
2.0
39
85
7
104
45
24
5
24
1.74
39055--39192
36
3.7
36
75
22
133
32
2
1
63
1.15
54233--54290
2
29.0
2
100
0
116
50
0
0
50
1.00
56574--56612
8
4.9
8
87
9
53
28
0
64
7
1.21
56572--56606
17
2.1
17
94
0
61
28
0
62
8
1.24
60884--60936
26
2.0
25
89
7
79
71
3
18
5
1.21
60891--60936
13
3.5
13
77
16
51
71
4
19
4
1.20
61991--62086
33
2.9
33
81
9
115
31
12
20
35
1.90
63301--63376
37
2.1
37
97
0
143
26
22
13
38
1.91
63411--63502
36
2.7
34
80
9
91
26
16
13
44
1.84
64997--65143
72
2.1
72
87
3
208
36
18
21
24
1.95
66442--66525
19
4.2
20
74
14
75
47
25
7
20
1.75
66434--66518
42
2.0
42
95
0
152
44
23
7
24
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66434--66497
23
3.0
23
73
15
73
45
21
7
25
1.78
68154--68256
7
14.9
7
75
9
86
17
0
35
46
1.48
68376--68438
11
5.9
11
69
14
51
38
1
3
57
1.24

Tables:   1

The End!