genome.fa.s1821.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001821.1 Hibiscus syriacus cultivar Beakdansim tig00003688_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188847

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4807--4970	33	5.0	33	73	5	143	29	26	28	15	1.96
4807--4962	66	2.4	66	86	2	233	28	26	28	16	1.97
10397--10510	36	3.2	36	81	7	142	46	4	6	42	1.48
10396--10697	35	8.7	35	69	18	166	47	4	5	42	1.47
10665--10707	24	1.9	23	86	13	63	41	0	6	51	1.29
10719--10757	11	3.9	10	83	12	53	23	0	0	76	0.78
10698--10765	20	3.3	20	76	17	52	25	2	1	70	1.09
10719--10764	21	2.2	20	84	7	56	21	2	0	76	0.90
13784--13828	19	2.4	19	92	3	74	11	13	8	66	1.44
17159--17851	84	8.4	83	78	6	743	29	25	22	23	1.99
17159--17860	164	4.3	164	96	1	1282	29	25	21	23	1.99
19008--19103	30	3.2	30	74	12	88	43	12	5	38	1.65
28350--28411	31	2.0	32	93	3	108	58	12	8	20	1.60
29007--29086	38	2.1	37	84	11	101	52	1	0	46	1.08
34673--34773	33	3.2	32	81	12	118	37	15	10	35	1.83
37064--37089	11	2.4	11	100	0	52	61	0	0	38	0.96
37974--38033	23	2.6	23	86	0	84	30	26	23	20	1.98
38058--38379	103	3.1	103	96	0	590	36	23	13	27	1.92
38811--38852	16	2.6	16	100	0	84	47	23	4	23	1.70
39217--39319	45	2.3	45	96	0	188	26	18	20	34	1.95
39259--39396	64	2.2	64	81	7	165	30	17	18	34	1.94
39171--39383	109	2.0	109	81	9	256	27	16	19	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43774--43820	23	2.0	23	84	8	60	29	23	2	44	1.65
44105--44181	23	3.3	23	75	1	82	33	20	20	24	1.97
44191--44508	103	3.1	103	95	0	573	36	23	12	27	1.91
45245--45465	64	3.5	64	81	4	223	28	19	18	33	1.95
51549--51609	31	2.0	31	86	0	86	40	13	14	31	1.84
63640--64937	324	4.0	324	96	0	2330	41	15	15	27	1.87
63640--64937	647	2.0	648	95	0	2348	41	15	15	27	1.87
66713--66765	21	2.5	21	75	6	54	60	3	0	35	1.15
68927--68981	28	2.0	28	85	0	74	32	14	16	36	1.89
69465--69497	17	2.0	17	88	5	50	45	3	0	51	1.16
74186--74268	38	2.2	38	93	0	130	44	10	16	27	1.81
87101--87201	50	2.0	50	85	11	136	38	10	5	44	1.64
87968--88043	13	5.5	13	75	14	62	17	47	19	15	1.83
87963--88035	31	2.4	31	90	0	110	17	49	19	13	1.80
87968--88043	31	2.7	26	76	18	80	17	47	19	15	1.83
87982--88022	18	2.3	18	95	0	73	17	48	21	12	1.79
89368--89405	18	2.1	18	90	0	58	50	0	18	31	1.47
90531--90641	48	2.3	48	80	9	120	20	14	16	48	1.80
90531--90641	24	4.6	24	72	6	100	20	14	16	48	1.80
90569--90637	12	5.8	12	72	6	59	17	11	17	53	1.72
91560--91655	39	2.5	39	94	0	165	40	13	7	38	1.72
91684--91781	48	2.0	49	88	5	146	40	13	5	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91734--91868	40	3.5	39	80	10	152	42	12	5	40	1.65
91734--91862	38	3.3	37	80	13	134	41	13	5	39	1.67
91996--92208	58	3.8	58	79	10	246	40	14	8	36	1.76
92047--92144	49	2.0	49	91	0	160	39	13	9	37	1.76
91996--92202	107	1.9	107	89	1	317	40	14	8	37	1.75
92357--92604	45	5.5	46	85	5	260	37	13	10	38	1.80
92376--92610	90	2.6	90	84	4	312	38	13	11	37	1.80
95688--95767	41	2.0	41	89	0	124	48	10	7	33	1.65
98781--98827	25	2.0	25	91	8	80	72	4	10	12	1.25
104641--104716	32	2.4	31	78	6	73	39	13	13	34	1.83
105814--105913	36	2.7	38	81	9	98	70	1	5	24	1.14
105847--105913	7	9.0	7	76	9	53	76	1	4	17	1.04
124773--124836	26	2.4	26	92	2	101	26	20	39	14	1.90
125351--125946	297	2.0	297	99	0	1174	30	18	17	34	1.93
137570--137628	29	2.0	29	100	0	118	49	13	13	23	1.78
142263--142348	29	3.0	29	100	0	172	45	13	16	24	1.84
142518--142555	19	2.0	19	89	0	58	36	5	7	50	1.54
147511--147548	19	2.0	19	100	0	76	21	10	10	57	1.61
160806--160847	17	2.4	18	84	4	59	57	2	2	38	1.25
160850--160938	25	3.3	27	72	20	80	49	0	5	44	1.25
160865--160927	25	2.6	26	82	12	89	47	0	7	44	1.32
161945--161984	15	2.7	15	88	3	55	57	2	0	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175525--175576	15	3.5	15	91	0	86	7	17	67	7	1.39
178067--178115	19	2.6	19	87	6	64	46	12	26	14	1.79
178872--178928	25	2.3	25	100	0	114	31	14	24	29	1.94
179426--179463	18	2.1	18	100	0	76	28	26	5	39	1.78
185730--185770	12	3.5	12	83	3	57	26	2	2	68	1.15

Tables:   1

The End!