Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001822.1 Hibiscus syriacus cultivar Beakdansim tig00003689_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61644

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1154--1214
23
2.7
23
78
14
74
22
27
26
22
1.99
2777--2814
18
2.1
18
90
0
58
42
28
26
2
1.69
4913--4960
15
3.1
15
82
8
53
43
0
0
56
0.99
4920--4956
12
3.2
12
88
3
58
45
0
0
54
1.00
6293--6331
19
2.1
19
85
4
53
28
2
2
66
1.18
6325--6384
29
2.1
29
81
12
70
36
6
3
53
1.44
13495--13641
20
7.3
20
92
3
242
22
22
23
31
1.98
14197--14228
14
2.2
15
94
5
57
43
0
0
56
0.99
16444--16484
18
2.3
18
95
0
73
56
19
17
7
1.64
19392--19608
22
9.9
22
84
6
262
48
8
0
42
1.33
19392--19608
44
5.0
44
91
6
291
48
8
0
42
1.33
20230--20275
2
23.0
2
95
0
83
47
0
2
50
1.13
21352--21407
23
2.4
23
88
5
78
48
16
17
17
1.82
24764--24891
39
3.3
39
86
0
157
21
27
19
31
1.98
25997--26169
43
4.0
43
77
3
132
33
20
20
24
1.97
26556--26588
15
2.1
16
88
5
50
69
6
3
21
1.24
27873--27983
29
3.8
28
67
17
73
43
0
17
38
1.55
28740--28982
128
1.9
129
85
0
335
32
21
13
32
1.92
30595--30631
16
2.4
16
86
8
51
51
5
8
35
1.55
30630--30683
2
27.0
2
100
0
108
50
0
0
50
1.00
32108--32193
46
1.9
44
83
4
109
52
4
3
39
1.39
34552--34600
23
2.1
23
85
7
64
26
2
14
57
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44773--44821
23
2.1
23
85
7
64
26
2
14
57
1.48
49926--49955
13
2.3
13
94
0
51
16
23
43
16
1.87
49932--49972
18
2.3
18
91
0
64
12
21
46
19
1.82
52013--52088
31
2.4
31
82
2
80
28
30
26
14
1.95
52030--52088
31
1.9
31
89
0
91
27
30
27
15
1.96
56398--56448
26
2.0
26
84
0
66
11
13
15
58
1.63

Tables:   1

The End!